def initialize(self):
# create date object
self.date = pyDate.Date(year=self.options['year'],
doy=self.options['doy'])
# check for pre-existing solution if lazy
(solutionAlreadyExists,
key) = Resources.soln_exists(self.date, self.options['expt'],
self.options['org'],
self.options['network_id'])
if solutionAlreadyExists and self.isLazy:
raise Processing.LazyException("file exists: " + key)
# do all the program independent stuff
super(Session, self).initialize()
# get the resource bucket path
bucket = self.get_resources_path()
# get the apr file
apr_file = glob.glob(os.path.join(bucket, '*.apr'))
# yell about it if not found
if len(apr_file) != 1:
raise GamitException('problem identifying APR resources in ' +
bucket)
# create apr file
wlapr2apr(os.path.join(bucket, apr_file[0]))
# get the binaries for gamit
self.files['bin'] = Resources.get_bin('gamit', self.work_dir_path)
# get the tables for gamit
self.files['tables'] = Resources.get_tables('gamit',
self.work_dir_path)
# create custom setup shell script
self.files['setup_script_path'] = self.__create_setup_script()
# create custom run script
self.files['run_script_path'] = self.__create_run_script()
# create the custom cleanup script
self.files['teardown_script_path'] = self.__create_teardown_script()
def initialize(self):
# no call to super.initialize(). just create work dir ourselves
year = Utils.get_norm_year_str(self.options['year']);
doy = Utils.get_norm_doy_str( self.options['doy'] );
# init date object
date = pyDate.Date(year=year,doy=doy);
# check for pre-existing solution if lazy
(solutionAlreadyExists, key) = Resources.soln_exists(
date,
self.options['expt'],
self.options['org'],
self.options['network_id']
)
if solutionAlreadyExists and self.isLazy:
raise Processing.LazyException("file exists: " + key)
# make sure we have something specified to work with
if len(self.src) == 0:
raise GlobkException('no src has been specified');
# make sure that work directory has been initialized
if not self.is_valid():
raise GlobkException('invalid session state');
# make sure the the temporary directory does not already exist
if os.path.isdir(self.work_dir_path):
raise GlobkException(
'temporary work directory '+self.work_dir_path+' already exists'
);
# attempt to create the work directory
try:
# make parent dirs also
os.makedirs(self.work_dir_path , 0755);
os.makedirs(self.get_resources_path(), 0755);
except Exception, e:
# unsuccessful attempt
raise GlobkException(str(e));
def initialize(self):
# create date object
self.date = pyDate.Date(year=self.options['year'], doy=self.options['doy'])
# check for pre-existing solution if lazy
(solutionAlreadyExists,key) = Resources.soln_exists(
self.date,
self.options['expt'],
self.options['org'],
self.options['network_id']
)
if solutionAlreadyExists and self.isLazy:
raise Processing.LazyException("file exists: "+key)
# do all the program independent stuff
super(Session, self).initialize();
# figure out which stations have APR
stns_with_apr = self.get_stns_with_apr();
# initialize DOMES for each station requested
# note that site.dat, gps.apr, and D-file use only stns listed in domesMgr
for stnid in self.stn_list:
# if there is no APR then do not add to DOMES
if not stnid in stns_with_apr:
os.sys.stderr.write('excluding station not found in apr: %s\n'%stnid)
continue
# parse the station id
(ns,code) = Utils.parse_stnId(stnid)
# add the station to the domes mgr if it's not already defined
if not self.domesMgr.containsStnId(code): self.domesMgr.addStn(code);
# get the resource bucket path
bucket = self.get_resources_path();
apr_file_path = self.files['apr']
# create gamit apr file for OTL computations
gamit_apr_file_path = gamit.wlapr2apr(apr_file_path)
# get the binaries for gamit (bin file path used by create_U_file)
self.files['bin'] = Resources.get_bin('napeos', self.work_dir_path)
# get the tables for gamit
self.files['tables'] = Resources.get_tables('napeos', self.work_dir_path)
# combine all of the station info files into single file
gamit_station_info_file_path = self.concatonate_station_info_files()
# convert the station info file into station.dat
napeos_station_dat_file_path = self.convert_station_info_to_dat(gamit_station_info_file_path)
# convert the generic agt apr file to napeos crd file
napeos_crd_file_path = self.convert_apr_to_crd(apr_file_path)
# create the site.dat file with domes numbers for each station
napeos_site_dot_dat = self.create_site_dot_dat()
napeos_BLQ_file_path = self.create_OTL_file(gamit_apr_file_path,self.domesMgr.stn_list())
# clean up all this shit
self.init_cleanup()
# create the setup script for the job
setup_script_file_path = self.create_setup_script()
# create the run script for the job
run_script_file_path = self.create_run_script()
# create the teardown script for the job
teardown_script_file_path = self.create_tear_down_script()
