コード例 #1
0
    def create_main_nomogram(
        self,
        attributes,
        attr_inds,
        name_items,
        points,
        max_width,
        point_text,
        name_offset,
    ):
        cls_index = self.target_class_index
        min_p = min(p.min() for p in points)
        max_p = max(p.max() for p in points)
        values = self.get_ruler_values(min_p, max_p, max_width)
        min_p, max_p = min(values), max(values)
        diff_ = np.nan_to_num(max_p - min_p)
        scale_x = max_width / diff_ if diff_ else max_width

        nomogram_header = NomogramItem()
        point_item = RulerItem(point_text, values, scale_x, name_offset,
                               -scale_x * min_p)
        point_item.setPreferredSize(point_item.preferredWidth(), 35)
        nomogram_header.add_items([point_item])

        self.nomogram_main = NomogramItem()
        cont_feature_item_class = (ContinuousFeature2DItem
                                   if self.cont_feature_dim_index else
                                   ContinuousFeatureItem)

        feature_items = [
            DiscreteFeatureItem(
                name_item, attr.values, point, scale_x, name_offset, -scale_x *
                min_p) if attr.is_discrete else cont_feature_item_class(
                    name_item,
                    self.log_reg_cont_data_extremes[i][cls_index],
                    self.get_ruler_values(point.min(), point.max(),
                                          scale_x * point.ptp(), False),
                    scale_x,
                    name_offset,
                    -scale_x * min_p,
                ) for i, attr, name_item, point in zip(attr_inds, attributes,
                                                       name_items, points)
        ]

        self.nomogram_main.add_items(feature_items)
        self.feature_items = OrderedDict(sorted(zip(attr_inds, feature_items)))

        x = -scale_x * min_p
        y = self.nomogram_main.layout().preferredHeight() + 10
        self.vertical_line = QGraphicsLineItem(x, -6, x, y)
        self.vertical_line.setPen(QPen(Qt.DotLine))
        self.vertical_line.setParentItem(point_item)
        self.hidden_vertical_line = QGraphicsLineItem(x, -6, x, y)
        pen = QPen(Qt.DashLine)
        pen.setBrush(QColor(Qt.red))
        self.hidden_vertical_line.setPen(pen)
        self.hidden_vertical_line.setParentItem(point_item)

        return point_item, nomogram_header
コード例 #2
0
ファイル: ownomogram.py プロジェクト: rowhit/orange3
    def create_main_nomogram(self, name_items, points, max_width, point_text,
                             name_offset):
        cls_index = self.target_class_index
        min_p = min(min(p) for p in points)
        max_p = max(max(p) for p in points)
        values = self.get_ruler_values(min_p, max_p, max_width)
        min_p, max_p = min(values), max(values)
        diff_ = np.nan_to_num(max_p - min_p)
        scale_x = max_width / diff_ if diff_ else max_width

        nomogram_header = NomogramItem()
        point_item = RulerItem(point_text, values, scale_x, name_offset,
                               -scale_x * min_p)
        point_item.setPreferredSize(point_item.preferredWidth(), 35)
        nomogram_header.add_items([point_item])

        self.nomogram_main = SortableNomogramItem()
        cont_feature_item_class = ContinuousFeature2DItem if \
            self.cont_feature_dim_index else ContinuousFeatureItem
        self.feature_items = [
            DiscreteFeatureItem(name_items[i], [val for val in att.values],
                                points[i], scale_x, name_offset, -scale_x *
                                min_p, self.points[i][cls_index])
            if att.is_discrete else cont_feature_item_class(
                name_items[i], self.log_reg_cont_data_extremes[i][cls_index],
                self.get_ruler_values(
                    np.min(points[i]), np.max(points[i]),
                    scale_x * (np.max(points[i]) - np.min(points[i])),
                    False), scale_x, name_offset, -scale_x *
                min_p, self.log_reg_coeffs_orig[i][cls_index][0])
            for i, att in enumerate(self.domain.attributes)
        ]
        self.nomogram_main.add_items(
            self.feature_items, self.sort_index,
            self.n_attributes if self.display_index else None)

        x = -scale_x * min_p
        y = self.nomogram_main.layout.preferredHeight() + 30
        self.vertical_line = QGraphicsLineItem(x, -6, x, y)
        self.vertical_line.setPen(QPen(Qt.DotLine))
        self.vertical_line.setParentItem(point_item)
        self.hidden_vertical_line = QGraphicsLineItem(x, -6, x, y)
        pen = QPen(Qt.DashLine)
        pen.setBrush(QColor(Qt.red))
        self.hidden_vertical_line.setPen(pen)
        self.hidden_vertical_line.setParentItem(point_item)

        return point_item, nomogram_header
コード例 #3
0
ファイル: ownomogram.py プロジェクト: astaric/orange3
    def create_main_nomogram(self, attributes, attr_inds, name_items, points,
                             max_width, point_text, name_offset):
        cls_index = self.target_class_index
        min_p = min(p.min() for p in points)
        max_p = max(p.max() for p in points)
        values = self.get_ruler_values(min_p, max_p, max_width)
        min_p, max_p = min(values), max(values)
        diff_ = np.nan_to_num(max_p - min_p)
        scale_x = max_width / diff_ if diff_ else max_width

        nomogram_header = NomogramItem()
        point_item = RulerItem(point_text, values, scale_x, name_offset,
                               - scale_x * min_p)
        point_item.setPreferredSize(point_item.preferredWidth(), 35)
        nomogram_header.add_items([point_item])

        self.nomogram_main = NomogramItem()
        cont_feature_item_class = ContinuousFeature2DItem if \
            self.cont_feature_dim_index else ContinuousFeatureItem

        feature_items = [
            DiscreteFeatureItem(
                name_item, attr.values, point,
                scale_x, name_offset, - scale_x * min_p)
            if attr.is_discrete else
            cont_feature_item_class(
                name_item, self.log_reg_cont_data_extremes[i][cls_index],
                self.get_ruler_values(
                    point.min(), point.max(),
                    scale_x * point.ptp(), False),
                scale_x, name_offset, - scale_x * min_p)
            for i, attr, name_item, point in zip(attr_inds, attributes, name_items, points)]

        self.nomogram_main.add_items(feature_items)
        self.feature_items = OrderedDict(sorted(zip(attr_inds, feature_items)))

        x = - scale_x * min_p
        y = self.nomogram_main.layout().preferredHeight() + 10
        self.vertical_line = QGraphicsLineItem(x, -6, x, y)
        self.vertical_line.setPen(QPen(Qt.DotLine))
        self.vertical_line.setParentItem(point_item)
        self.hidden_vertical_line = QGraphicsLineItem(x, -6, x, y)
        pen = QPen(Qt.DashLine)
        pen.setBrush(QColor(Qt.red))
        self.hidden_vertical_line.setPen(pen)
        self.hidden_vertical_line.setParentItem(point_item)

        return point_item, nomogram_header
コード例 #4
0
def update_pen(pen,
               brush=None,
               width=None,
               style=None,
               cap_style=None,
               join_style=None,
               cosmetic=None):
    pen = QPen(pen)
    if brush is not None:
        pen.setBrush(QBrush(brush))
    if width is not None:
        pen.setWidth(width)
    if style is not None:
        pen.setStyle(style)
    if cap_style is not None:
        pen.setCapStyle(cap_style)
    if join_style is not None:
        pen.setJoinStyle(join_style)
    if cosmetic is not None:
        pen.setCosmetic(cosmetic)
    return pen
コード例 #5
0
ファイル: ownomogram.py プロジェクト: rowhit/orange3
    def __init__(self, name, data_extremes, values, scale, name_offset, offset,
                 coef):
        super().__init__()
        data_start, data_stop = data_extremes[0], data_extremes[1]
        self.name = name.toPlainText()
        self.diff = (data_stop - data_start) * coef
        labels = [
            str(
                np.round(
                    data_start + (data_stop - data_start) * i /
                    (self.n_tck - 1), 1)) for i in range(self.n_tck)
        ]

        # leading label
        font = name.document().defaultFont()
        name.setFont(font)
        name.setPos(name_offset, -10)
        name.setParentItem(self)

        # labels
        ascending = data_start < data_stop
        y_start, y_stop = (self.y_diff, 0) if ascending else (0, self.y_diff)
        for i in range(self.n_tck):
            text = QGraphicsSimpleTextItem(labels[i])
            w = text.boundingRect().width()
            y = y_start + (y_stop - y_start) / (self.n_tck - 1) * i
            text.setPos(-5 - w, y - 8)
            text.setParentItem(self)
            tick = QGraphicsLineItem(-2, y, 2, y)
            tick.setParentItem(self)

        # prediction marker
        self.dot = Continuous2DMovableDotItem(self.dot_r, scale, offset,
                                              values[0], values[-1], y_start,
                                              y_stop)
        self.dot.tooltip_labels = labels
        self.dot.tooltip_values = values
        self.dot.setParentItem(self)
        h_line = QGraphicsLineItem(values[0] * scale + offset, self.y_diff / 2,
                                   values[-1] * scale + offset,
                                   self.y_diff / 2)
        pen = QPen(Qt.DashLine)
        pen.setBrush(QColor(Qt.red))
        h_line.setPen(pen)
        h_line.setParentItem(self)
        self.dot.horizontal_line = h_line

        # line
        line = QGraphicsLineItem(values[0] * scale + offset, y_start,
                                 values[-1] * scale + offset, y_stop)
        line.setParentItem(self)

        # ticks
        for value in values:
            diff_ = np.nan_to_num(values[-1] - values[0])
            k = (value - values[0]) / diff_ if diff_ else 0
            y_tick = (y_stop - y_start) * k + y_start - self.tick_height / 2
            x_tick = value * scale - self.tick_width / 2 + offset
            tick = QGraphicsRectItem(x_tick, y_tick, self.tick_width,
                                     self.tick_height)
            tick.setBrush(QColor(Qt.black))
            tick.setParentItem(self)

        # rect
        rect = QGraphicsRectItem(values[0] * scale + offset,
                                 -self.y_diff * 0.125,
                                 values[-1] * scale + offset,
                                 self.y_diff * 1.25)
        pen = QPen(Qt.DotLine)
        pen.setBrush(QColor(50, 150, 200, 255))
        rect.setPen(pen)
        rect.setParentItem(self)
        self.setPreferredSize(self.preferredWidth(), self.y_diff * 1.5)
コード例 #6
0
ファイル: ownomogram.py プロジェクト: astaric/orange3
    def __init__(self, name, data_extremes, values, scale, name_offset, offset):
        super().__init__()
        data_start, data_stop = data_extremes[0], data_extremes[1]
        labels = [str(np.round(data_start + (data_stop - data_start) * i /
                               (self.n_tck - 1), 1)) for i in range(self.n_tck)]

        # leading label
        font = name.document().defaultFont()
        name.setFont(font)
        name.setPos(name_offset, -10)
        name.setParentItem(self)

        # labels
        ascending = data_start < data_stop
        y_start, y_stop = (self.y_diff, 0) if ascending else (0, self.y_diff)
        for i in range(self.n_tck):
            text = QGraphicsSimpleTextItem(labels[i], self)
            w = text.boundingRect().width()
            y = y_start + (y_stop - y_start) / (self.n_tck - 1) * i
            text.setPos(-5 - w, y - 8)
            tick = QGraphicsLineItem(-2, y, 2, y, self)

        # prediction marker
        self.dot = Continuous2DMovableDotItem(
            self.DOT_RADIUS, scale, offset, values[0], values[-1], y_start, y_stop)
        self.dot.tooltip_labels = labels
        self.dot.tooltip_values = values
        self.dot.setParentItem(self)
        h_line = QGraphicsLineItem(values[0] * scale + offset, self.y_diff / 2,
                                   values[-1] * scale + offset, self.y_diff / 2,
                                   self)
        pen = QPen(Qt.DashLine)
        pen.setBrush(QColor(Qt.red))
        h_line.setPen(pen)
        self.dot.horizontal_line = h_line

        # pylint: disable=unused-variable
        # line
        line = QGraphicsLineItem(values[0] * scale + offset, y_start,
                                 values[-1] * scale + offset, y_stop,
                                 self)

        # ticks
        for value in values:
            diff_ = np.nan_to_num(values[-1] - values[0])
            k = (value - values[0]) / diff_ if diff_ else 0
            y_tick = (y_stop - y_start) * k + y_start - self.tick_height / 2
            x_tick = value * scale - self.tick_width / 2 + offset
            tick = QGraphicsRectItem(
                x_tick, y_tick, self.tick_width, self.tick_height,
                self)
            tick.setBrush(QColor(Qt.black))

        # rect
        rect = QGraphicsRectItem(
            values[0] * scale + offset, -self.y_diff * 0.125,
            values[-1] * scale + offset, self.y_diff * 1.25,
            self)
        pen = QPen(Qt.DotLine)
        pen.setBrush(QColor(50, 150, 200, 255))
        rect.setPen(pen)
        self.setPreferredSize(self.preferredWidth(), self.y_diff * 1.5)