def test_str_strip(self): """Check matches the python string strip method.""" self._test_method("strip") s = Seq(" ACGT ") m = MutableSeq(" ACGT ") self.assertEqual(s.strip(), "ACGT") self.assertRaises(TypeError, s.strip, 7) self.assertEqual(s, " ACGT ") self.assertEqual(m.strip(), "ACGT") self.assertRaises(TypeError, m.strip, 7) self.assertEqual(m, " ACGT ") self.assertEqual(m.strip(inplace=True), "ACGT") self.assertEqual(m, "ACGT")
from Bio.Seq import Seq from Bio.Alphabet import single_letter_alphabet seq=Seq("ACGT") print("Sequence: %s"%seq) print("Alphabet: %s"%seq.alphabet) print(seq) test_seq=Seq('AGTATCGAATCGA',single_letter_alphabet) print(test_seq) print(test_seq.alphabet) seq=Seq('ACGTTCGCA') print(seq[0]) print(seq) for i in range(0,len(seq)): print(seq[i]) seq2=Seq('AAATTT') seq=seq+seq2 print(seq.lower()) print(seq.upper()) seq3 = Seq(' ACGT ') print(seq3) print(seq3.strip())