def cleanup(self):
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.prosaPdbFile)
T.tryRemove(self.f_in)
T.tryRemove(self.prosaOutput + '.ana')
def cleanup( self ):
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.prosaPdbFile )
T.tryRemove( self.f_in)
T.tryRemove( self.prosaOutput + '.ana' )
def cleanup( self ):
"""
Tidy up the mess you created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb )
def cleanup(self):
"""
Tidy up the mess you created.
"""
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.f_pdb)
def cleanup( self ):
"""
Remove temp files.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_xyzrn )
T.tryRemove( self.f_surf + '.area' )
def cleanup( self ):
"""
Remove temp files.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_xyzrn )
T.tryRemove( self.f_surf + '.area' )
def cleanup(self):
"""
remove temporary files
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.inp1 )
T.tryRemove( self.inp2 )
def cleanup(self):
"""
remove temporary files
"""
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.inp1)
T.tryRemove(self.inp2)
def cleanup( self ):
"""
Tidy up the mess you created.
Does nothing. No temporary files are created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdbin )
T.tryRemove( self.f_out)
def cleanup(self):
"""
Tidy up the mess you created.
Does nothing. No temporary files are created.
"""
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.f_pdbin)
T.tryRemove(self.f_out)
def cleanup( self ):
"""
Tidy up the mess we created. Called after program execution.
"""
Executor.cleanup( self )
if not self.debug:
## remove all files created by intervor
for f in glob.glob( self.f_prefix + '*' ):
T.tryRemove( f )
def cleanup(self):
"""
Tidy up the mess we created. Called after program execution.
"""
Executor.cleanup(self)
if not self.debug:
## remove all files created by intervor
for f in glob.glob(self.f_prefix + '*'):
T.tryRemove(f)
def cleanup(self):
"""
Tidy up the mess you created.
"""
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.f_ref)
for i in range(len(self.models)):
T.tryRemove(self.f_pdb % i)
def cleanup( self ):
"""
Tidy up the mess you created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_ref )
for i in range( len(self.models)):
T.tryRemove( self.f_pdb % i )
def cleanup( self ):
"""
Tidy up the mess you created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb, verbose=self.verbose )
T.tryRemove( self.f_out_name, verbose=self.verbose )
T.tryRemove( os.path.join(self.cwd, 'result.txt'),
verbose=self.verbose )
T.tryRemove( self.f_pdb[:-4]+'_residue.txt', verbose=self.verbose)
def cleanup( self ):
"""
Tidy up the mess you created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb, verbose=self.verbose )
T.tryRemove( self.f_out_name, verbose=self.verbose )
T.tryRemove( os.path.join(self.cwd, 'result.txt'),
verbose=self.verbose )
T.tryRemove( self.f_pdb[:-4]+'_residue.txt', verbose=self.verbose)
def cleanup( self ):
"""
Tidy up the mess you created.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb )
T.tryRemove( self.f_relativeASA )
T.tryRemove( self.f_residueASA )
T.tryRemove('FOR???.DAT', wildcard=1)
T.tryRemove('pdbout.tex')
T.tryRemove('pdbout.txt')
T.tryRemove('TEXSTORE.DAT')
T.tryRemove('TEXTABLE.DAT')
def cleanup(self):
"""
Tidy up the mess you created.
"""
Executor.cleanup(self)
if not self.debug:
T.tryRemove(self.f_pdb)
T.tryRemove(self.f_relativeASA)
T.tryRemove(self.f_residueASA)
T.tryRemove('FOR???.DAT', wildcard=1)
T.tryRemove('pdbout.tex')
T.tryRemove('pdbout.txt')
T.tryRemove('TEXSTORE.DAT')
T.tryRemove('TEXTABLE.DAT')
def cleanup( self ):
"""
Remove files created for and by the calculation.
"""
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.temp_pdb )
T.tryRemove( self.temp_command )
T.tryRemove( self.temp_option )
T.tryRemove( self.temp_result )
T.tryRemove( self.temp_runlog )
T.tryRemove( self.temp_errlog )
## Fold-X writes a file called "runlog.txt"
## to local directory. Try to remove it.
T.tryRemove( 'runlog.txt' )
## and even though the error log is supposed
## to be written to self.temp_errlog, I get a
## 'errorfile.txt' in the local directory. Remove.
T.tryRemove( 'errorfile.txt' )
def cleanup(self):
if not self.debug:
T.tryRemove(self.foutName)
self.deletePdbs()
Executor.cleanup(self)
def cleanup( self ):
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb )
def cleanup( self ):
Executor.cleanup( self )
if not self.debug:
T.tryRemove( self.f_pdb )
