def test_interpertBlast(self):
tempBlast = Blast("", "")
tempBlast.makeDatabase("test_data/reference.fasta")
tempBlast.aliasTool("test_data/reference.fasta", "test_data")
tempBlast.query = "test_data/contigs_1.fasta"
tempBlast.doBlast("test_data")
tempBlast.interpertBlast("test_data")
self.assertEqual(len(tempBlast.hitSet), 3)
def test_doBlast(self):
tempBlast = Blast("", "")
tempBlast.makeDatabase("test_data/reference.fasta")
tempBlast.aliasTool("test_data/reference.fasta", "test_data")
tempBlast.query = "test_data/contigs_1.fasta"
tempBlast.doBlast("test_data")
try:
outputFile = open("test_data/blastResult.csv")
testResult = True
for line in outputFile:
if "gi|49175990|ref|NC_000913.2|" not in line:
testResult = False
self.assertTrue(testResult)
except IOError as error:
self.fail(error)
