def runSoapdenovo(infile, outfile): ''' run soapdenovo ''' job_options = "-l mem_free=30G" statement = PipelineMetagenomeAssembly.SoapDenovo2().build(infile) P.run()
def buildSoapdenovoConfig(infile, outfile): ''' run SGA on each track ''' PipelineMetagenomeAssembly.SoapDenovo2().config(infile, outfile, PARAMS)