def runSoapdenovo(infile, outfile):
'''
run soapdenovo
'''
job_options = "-l mem_free=30G"
statement = PipelineMetagenomeAssembly.SoapDenovo2().build(infile)
P.run()
def buildSoapdenovoConfig(infile, outfile):
'''
run SGA on each track
'''
PipelineMetagenomeAssembly.SoapDenovo2().config(infile, outfile, PARAMS)
