コード例 #1
0
ファイル: pipeline_transfacmatch.py プロジェクト: jmadzo/cgat 
def calculateGCContent(infiles, outfile):
    '''
    calculate the GC content across foreground and 
    background sets
    '''
    PipelineTransfacMatch.calculateCpGComposition(
        infiles[0], infiles[1], outfile)
コード例 #2
0
ファイル: pipeline_transfacmatch.py プロジェクト: yangjl/cgat 
def calculateGCContent(infiles, outfile):
    '''
    calculate the GC content across foreground and 
    background sets
    '''
    PipelineTransfacMatch.calculateCpGComposition(infiles[0], infiles[1],
                                                  outfile)
コード例 #3
0
 def calculateCpGcomposition(infiles, outfile):
     '''
     calculate the GC content for the CpG matched data
     Should be the same as the CpG content of the foreground
     set
     '''
     PipelineTransfacMatch.calculateCpGComposition(infiles[0], infiles[1], outfile)
コード例 #4
0
ファイル: pipeline_transfacmatch.py プロジェクト: yangjl/cgat 
 def calculateCpGcomposition(infiles, outfile):
     '''
     calculate the GC content for the CpG matched data
     Should be the same as the CpG content of the foreground
     set
     '''
     PipelineTransfacMatch.calculateCpGComposition(infiles[0], infiles[1],
                                                   outfile)