def set_color_count(self, n):
if n == self.n:
return
if n > len(self.colorwells):
# Add more color buttons
for c in range(len(self.colorwells), n):
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(self.frame)
cw.grid(row=2 * (c / 5), column=c % 5)
self.colorwells.append(cw)
from CGLtk import Hybrid
e = Hybrid.Entry(self.frame, '', 5, '')
e.frame.grid(row=2 * (c / 5) + 1, column=c % 5)
e.entry.bind('<KeyPress-Return>', self.colormap_changed_cb)
self.entry_fields.append(e)
# Map additional colorwells
for c in range(self.n, n):
self.colorwells[c].grid()
self.entry_fields[c].frame.grid()
# Unmap extra colorwells
for c in range(n, self.n):
self.colorwells[c].grid_remove()
self.entry_fields[c].frame.grid_remove()
self.n = n
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera.widgets import MoleculeOptionMenu
mm = MoleculeOptionMenu(parent, labelpos = 'w', label_text = 'Molecule ')
mm.grid(row = row, column = 0, sticky = 'w')
self.molecule_menu = mm
row = row + 1
cd = Hybrid.Entry(parent, 'Contact distance', 5, '1.0')
cd.frame.grid(row = row, column = 0, sticky = 'w')
self.contact_distance = cd.variable
cd.entry.bind('<KeyPress-Return>', self.show_contacts)
row = row + 1
mc = Hybrid.Checkbutton(parent, 'Create copies of contacting molecules.', False)
mc.button.grid(row = row, column = 0, sticky = 'w')
row += 1
self.copy_molecule = mc.variable
msg = Tkinter.Label(parent, anchor = 'w', justify = 'left')
msg.grid(row = row, column = 0, sticky = 'ew')
row = row + 1
self.message_label = msg
def fillInUI(self, parent):
self.surface_change_handler = None
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera import widgets
from MeasureVolume import surface_models
sm = widgets.ModelOptionMenu(parent, labelpos = 'w',
label_text = 'Surface ',
listFunc = surface_models,
command = self.surface_menu_cb)
sm.grid(row = row, column = 0, sticky = 'w')
self.surface_menu = sm
row = row + 1
ve = Hybrid.Entry(parent, 'Volume = ', 20)
ve.entry.configure(relief = Tkinter.FLAT, state = 'readonly',
highlightthickness = 0)
ve.frame.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.volume = ve.variable
ae = Hybrid.Entry(parent, 'Area = ', 20)
ae.entry.configure(relief = Tkinter.FLAT, state = 'readonly',
highlightthickness = 0)
ae.frame.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.area = ae.variable
au = Hybrid.Checkbutton(parent, 'Update automatically', True)
au.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.autoupdate = au.variable
au.callback(self.update_switch_cb)
# Set menu to a displayed surface.
surfs = filter(lambda sm: sm.display, surface_models())
if surfs:
self.surface_menu.setvalue(surfs[0])
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1) # Allow scalebar to expand.
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera.widgets import MoleculeOptionMenu
mm = MoleculeOptionMenu(parent,
labelpos='w',
label_text='Molecule ',
command=self.show_cumulative_transform)
mm.grid(row=row, column=0, sticky='w')
self.molecule_menu = mm
row = row + 1
ea = Hybrid.Entry(parent, 'Euler angles ', 25, '0 0 0')
ea.frame.grid(row=row, column=0, sticky='e')
row = row + 1
self.euler_angles = ea.variable
tr = Hybrid.Entry(parent, 'Shift ', 25, '0 0 0')
tr.frame.grid(row=row, column=0, sticky='e')
row = row + 1
self.translation = tr.variable
cas = Tkinter.Label(parent, text='', justify='left')
cas.grid(row=row, column=0, sticky='w')
self.cumulative = cas
row = row + 1
el = Tkinter.Label(
parent,
text=
'Apply rotation and translation to atom coordinates\n using the molecule coordinate system.',
justify='left')
el.grid(row=row, column=0, sticky='w')
row = row + 1
self.show_cumulative_transform(None)
def fillInUI(self, parent):
SaveModeless.fillInUI(self, parent)
from CGLtk import Hybrid
br = Hybrid.Entry(self.clientArea, 'Bit rate (Kb/sec):', 6,
self.default_bit_rate)
br.frame.grid(row=0, column=0, sticky='w')
self.bit_rate = br.variable
def _componentsCB(self, opt, update=True):
cf = self.componentsFrame
if hasattr(self, 'wells'):
for well in self.wells:
well.grid_forget()
well.destroy()
for label in self.labels:
label.frame.grid_forget()
self.reverseButton.grid_forget()
self.reverseButton.destroy()
else:
Tkinter.Label(cf, text="Colors").grid(row=0)
Tkinter.Label(cf, text="Labels").grid(row=0, column=1)
if isinstance(opt, int):
numComponents = opt
self.numComponents.set(opt)
else:
numComponents = opt.get()
wellSize = min(38, int((7 * 38) / numComponents))
from CGLtk.color.ColorWell import ColorWell
self.wells = []
self.labels = []
from CGLtk import Hybrid
for i in range(numComponents):
well = ColorWell(cf,
width=wellSize,
height=wellSize,
callback=self._keyChangeCB,
color='white')
well.grid(row=i + 1)
self.wells.append(well)
label = Hybrid.Entry(cf, "", 10)
label.variable.add_callback(self._keyTypingCB)
label.frame.grid(row=i + 1, column=1, sticky='ew')
self.labels.append(label)
self.reverseButton = Tkinter.Button(cf,
command=self.reverseKey,
text="Reverse ordering of above",
pady=0)
self.reverseButton.grid(row=numComponents + 1, column=0, columnspan=2)
self.notebook.setnaturalsize()
if update:
self._keyChangeCB()
def fillInUI(self, parent):
subsample_size_text = '(%d,%d,%d)' % self.subsample_size
size_text = '(%d,%d,%d)' % self.full_data_size
step_ranges = map(lambda r: '%d-%d' % r, self.allowed_step_ranges)
allowed_steps = '%s %s %s' % tuple(step_ranges)
msg = ('There are multiple possible subsample cell sizes for\n' +
'%s %s as subsamples of %s %s.\n' %
(self.subsample_name, subsample_size_text, self.full_data_name,
size_text) + 'Possibile cell sizes are %s.' % allowed_steps)
import Tkinter
lbl = Tkinter.Label(parent, text=msg, justify='left')
lbl.grid(row=0, column=0, sticky='w')
csize = '%d %d %d' % tuple(
map(lambda r: r[1], self.allowed_step_ranges))
from CGLtk import Hybrid
cs = Hybrid.Entry(parent, 'Cell size ', 15, csize)
cs.frame.grid(row=1, column=0, sticky='w')
self.cell_size_var = cs.variable
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from chimera import widgets
from SurfaceColor import colorable_surface_models
sm = widgets.ModelOptionMenu(parent,
labelpos='w',
label_text='Color surface ',
listFunc=colorable_surface_models,
command=self.surface_menu_cb)
sm.grid(row=row, column=0, sticky='w')
self.surface_menu = sm
row = row + 1
from SurfaceColor import coloring_methods
methods = [cm.menu_name for cm in coloring_methods]
csm = Hybrid.Option_Menu(parent, 'by ', *methods)
csm.frame.grid(row=row, column=0, sticky='w')
self.color_source_menu = csm.variable
csm.add_callback(self.color_source_changed_cb)
row = row + 1
from VolumeViewer import Volume_Menu
vm = Volume_Menu(parent, 'file', open_button='browse...')
vm.frame.grid(row=row, column=0, sticky='w')
self.volume_menu = vm
row += 1
oaf = Tkinter.Frame(parent)
oaf.grid(row=row, column=0, sticky='w')
row = row + 1
self.origin_axis_frame = oaf
oe = Hybrid.Entry(oaf, 'origin ', 8, '0 0 0')
oe.frame.grid(row=0, column=0, sticky='w')
self.origin_variable = oe.variable
oe.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cb = Tkinter.Button(oaf, text='center', command=self.set_center_cb)
cb.grid(row=0, column=1, sticky='w')
ae = Hybrid.Entry(oaf, 'axis ', 8, '0 0 1')
ae.frame.grid(row=0, column=2, sticky='w')
self.axis_frame = ae.frame
self.axis_variable = ae.variable
ae.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cg = Colorwell_GUI(parent, 5, self.settings_changed_cb)
cg.set_color_palette('rainbow')
self.colormap_gui = cg
self.colormap_gui.frame.grid(row=row, column=0, sticky='w')
row = row + 1
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='ne')
cf = Tkinter.Frame(opf)
cf.grid(row=orow, column=0, sticky='w')
orow += 1
color_counts = ('2', '3', '5', '10', '15', '20')
cc = Hybrid.Option_Menu(cf, 'Colors ', *color_counts)
cc.frame.grid(row=0, column=0, sticky='w')
self.color_count = cc.variable
self.color_count.set('5')
cc.add_callback(self.change_color_count_cb)
cpat = ('Rainbow', 'Gray', 'Red-Blue', 'Cyan-Maroon')
cp = Hybrid.Option_Menu(cf, 'Palette', *cpat)
cp.frame.grid(row=0, column=1, sticky='w')
self.palette = cp.variable
cp.add_callback(self.change_color_palette_cb)
rc = Tkinter.Button(cf, text='Reverse', command=self.reverse_colors_cb)
rc.grid(row=0, column=2, sticky='w')
ckb = Tkinter.Button(opf,
text="Create color key",
command=self.colormap_gui.color_key_cb)
ckb.grid(row=orow, column=0, sticky='w')
orow += 1
dcf = Tkinter.Frame(opf)
dcf.grid(row=orow, column=0, sticky='w')
orow += 1
db = Tkinter.Button(dcf,
text='Set',
command=self.show_default_colormap_values)
db.grid(row=0, column=0, sticky='w')
dt = Tkinter.Label(dcf, text=' full range of surface values')
dt.grid(row=0, column=1, sticky='w')
so = Hybrid.Entry(opf, 'Surface offset ', 5, '1.4')
so.frame.grid(row=orow, column=0, sticky='w')
self.surface_offset = so.variable
self.surface_offset_frame = so.frame
orow += 1
so.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
ocf = Tkinter.Frame(opf)
ocf.grid(row=orow, column=0, sticky='w')
orow += 1
self.outside_color_frame = ocf
ocl = Tkinter.Label(ocf, text='Color outside volume')
ocl.grid(row=0, column=0, sticky='w')
outside_color = (.5, .5, .5, 1)
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(ocf)
cw.showColor(outside_color)
cw.grid(row=0, column=1, sticky='w')
self.outside_color = cw
co = Hybrid.Checkbutton(opf, 'Only color sliced surface face', 0)
co.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.color_caps_only = co.variable
ppc = Hybrid.Checkbutton(opf, 'Per-pixel coloring', False)
ppc.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.per_pixel_color = ppc.variable
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
# Show current coloring if one already exists from session restore.
self.surface_menu_cb()
# Show axix, origin, volume widgets if appropriate.
self.color_source_changed_cb()
def fillInUI(self, parent):
self.phantom_device = None
self.cursor_model = None
self.phantom_handler = None
self.gradient_force = None
self.phantom_button_down = 0
self.last_phantom_transform = None
self.last_roll = None
self.key_callback_registered = None
self.mode = 'cursor' # 'cursor', 'move models', 'zoom',
# 'contour level', 'move marker'
self.command_list_shown = False
import Tkinter
from CGLtk import Hybrid
row = 0
po = Hybrid.Checkbutton_Row(parent, 'Enable',
('cursor', 'forces', 'key commands'))
po.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.phantom_on, self.force_field, self.commands = \
[c.variable for c in po.checkbuttons]
self.phantom_on.add_callback(self.settings_changed_cb)
self.force_field.add_callback(self.settings_changed_cb)
self.commands.add_callback(self.toggle_commands_cb)
cf = Tkinter.Frame(parent)
cf.grid(row=row, column=0, sticky='w')
row = row + 1
cs = Hybrid.Option_Menu(cf, 'Cursor shape ', 'cross', 'jack', 'sphere',
'volume crosshair')
cs.frame.grid(row=0, column=0, sticky='nw')
row = row + 1
cs.variable.set('jack')
cs.add_callback(self.settings_changed_cb)
self.cursor_shape = cs.variable
from VolumeViewer import active_volume
v = active_volume()
if v:
csize = '%.3g' % (10 * max(v.data.step))
else:
csize = '1'
cs = Hybrid.Entry(cf, ' size ', 5, csize)
cs.frame.grid(row=0, column=1, sticky='w')
cs.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.cursor_size = cs.variable
cl = Tkinter.Label(cf, text=' color ')
cl.grid(row=0, column=2, sticky='w')
from CGLtk.color import ColorWell
cc = ColorWell.ColorWell(cf, callback=self.settings_changed_cb)
self.cursor_color = cc
cc.showColor((0, 0.5, 1), doCallback=0)
cc.grid(row=0, column=3, sticky='w')
sp = Hybrid.Popup_Panel(parent)
spf = sp.frame
spf.grid(row=row, column=0, sticky='news')
spf.grid_remove()
spf.columnconfigure(0, weight=1)
self.settings_panel = sp.panel_shown_variable
row += 1
srow = 0
cb = sp.make_close_button(spf)
cb.grid(row=srow, column=1, sticky='e')
pr = Hybrid.Entry(spf, 'Phantom physical range (mm) ', 5, '200')
pr.frame.grid(row=srow, column=0, sticky='w')
srow += 1
pr.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.phantom_range = pr.variable
mf = Hybrid.Entry(spf, 'Maximum force (lbs) ', 5, '.4')
mf.frame.grid(row=srow, column=0, sticky='w')
srow += 1
mf.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.maximum_force = mf.variable
af = Hybrid.Checkbutton(spf, 'Auto-adjust force constant', 1)
af.button.grid(row=srow, column=0, sticky='w')
srow += 1
self.auto_adjust_force_constant = af.variable
self.force_field.add_callback(self.settings_changed_cb)
fc = Hybrid.Logarithmic_Scale(spf, 'Force constant ', .0001, 100, 1,
'%.2g')
fc.frame.grid(row=srow, column=0, sticky='ew')
srow += 1
fc.set_value(1)
fc.callback(self.force_constant_changed_cb)
fc.entry.bind('<KeyPress-Return>', self.force_constant_changed_cb)
self.force_constant = fc
vf = Tkinter.Frame(spf)
vf.grid(row=srow, column=0, sticky='ew')
srow += 1
self.label_row(vf, 0, ('', 'x', 'y', 'z'))
pl = self.label_row(vf, 1, ('Phantom position', '', '', ''))
self.phantom_position_labels = pl[1:]
cpl = self.label_row(vf, 2, ('Chimera position', '', '', ''))
self.chimera_position_labels = cpl[1:]
vpl = self.label_row(vf, 3, ('Volume position', '', '', ''))
self.volume_position_labels = vpl[1:]
vil = self.label_row(vf, 4, ('Volume index', '', '', ''))
self.volume_index_labels = vil[1:]
gl = self.label_row(vf, 5, ('Gradient', '', '', ''))
self.gradient_labels = gl[1:]
fl = self.label_row(vf, 6, ('Force', '', '', ''))
self.force_labels = fl[1:]
dvl = self.label_row(vf, 7, ('Data value', ''))
self.data_value_label = dvl[1]
def fillInUI(self, parent):
self.default_radius = 100
self.surface_model = None
self.surface_piece = None
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
# Radius
rs = Hybrid.Scale(parent, 'Radius ', 1, 1000, 0.01,
self.default_radius)
rs.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
rs.callback(self.radius_changed_cb)
rs.entry.bind('<KeyPress-Return>', self.radius_changed_cb)
self.radius = rs
# Interpolation factor between icosahedron and sphere
sf = Hybrid.Scale(parent, 'Sphere factor ', 0, 1, .01, 0)
sf.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
sf.callback(self.sphere_factor_changed_cb)
sf.entry.bind('<KeyPress-Return>', self.sphere_factor_changed_cb)
self.sphere_factor = sf
# Orientation menu
self.orient_222 = 'xyz 2-fold axes'
self.orient_222r = 'xyz 2-fold axes, alt'
self.orient_2n3 = 'x 2-fold, z 3-fold'
self.orient_2n3r = 'x 2-fold, z 3-fold, alt'
self.orient_2n5 = 'x 2-fold, z 5-fold'
self.orient_2n5r = 'x 2-fold, z 5-fold, alt'
self.orient_n25 = 'y 2-fold, z 5-fold'
self.orient_n25r = 'y 2-fold, z 5-fold, alt'
io = Hybrid.Option_Menu(parent, 'Orientation ', self.orient_222,
self.orient_222r, self.orient_2n3,
self.orient_2n3r, self.orient_2n5,
self.orient_2n5r, self.orient_n25,
self.orient_n25r)
io.frame.grid(row=row, column=0, sticky='w')
io.add_callback(self.show_cb)
row = row + 1
self.orientation = io.variable
# Subdivision factor
sf = Tkinter.Frame(parent)
sf.grid(row=row, column=0, sticky='w')
row = row + 1
sb = Hybrid.Entry(sf, 'Subdivision factor ', 5, '1')
sb.frame.grid(row=0, column=0, sticky='w')
self.subdivision_factor = sb.variable
sb.entry.bind('<KeyPress-Return>', self.show_cb)
sp = Tkinter.Label(sf, text='')
sp.grid(row=0, column=1, sticky='w')
self.subdivision_spacing = sp
# Surface style: filled, mesh
st = Hybrid.Radiobutton_Row(parent, 'Surface style: ',
('solid', 'mesh'), self.style_changed_cb)
st.frame.grid(row=row, column=0, sticky='w')
st.variable.set('mesh', invoke_callbacks=False)
row = row + 1
self.surface_style = st.variable
# Color
cf = Tkinter.Frame(parent)
cf.grid(row=row, column=0, sticky='w')
row = row + 1
cl = Tkinter.Label(cf, text='Color')
cl.grid(row=0, column=0, sticky='w')
initial_color = (.7, .7, .7, 1)
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(cf, callback=self.color_changed_cb)
cw.showColor(initial_color)
cw.grid(row=0, column=1, sticky='w')
self.color = cw
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
def fillInUI(self, parent):
self.filter_widgets = fw = []
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1) # Allow scalebar to expand.
row = 0
import Tkinter
from CGLtk import Hybrid
self.gaussian = 'Gaussian'
self.median = 'Median 3x3x3'
self.bin = 'Bin'
self.laplacian = 'Laplacian'
self.fourier = 'Fourier Transform'
self.scale = 'Scale'
ft = Hybrid.Option_Menu(parent, 'Filter type:',
self.gaussian, self.median, self.bin,
self.laplacian, self.fourier, self.scale)
ft.button.configure(indicatoron = False)
ft.frame.grid(row = row, column = 0, sticky = 'w')
row += 1
self.filter_type = ft.variable
ft.add_callback(self.filter_type_changed_cb)
ws = Hybrid.Scale(parent, 'Width ', 1.0, 10.0, 0.0, 1.0)
ws.frame.grid(row = row, column = 0, sticky = 'ew')
row += 1
ws.callback(self.filter_parameter_changed_cb)
ws.entry.bind('<KeyPress-Return>', self.filter_cb)
self.sdev = ws
Hybrid.Balloon_Help(ws.label, 'Width is one standard deviation.',
delay = 0.5)
fw.append((self.gaussian, ws.frame))
mi = Hybrid.Scale(parent, 'Iterations ', 0, 5, 1, 1, 2)
mi.frame.grid(row = row, column = 0, sticky = 'ew')
row += 1
mi.callback(self.filter_parameter_changed_cb)
mi.entry.bind('<KeyPress-Return>', self.filter_cb)
self.median_iterations = mi
fw.append((self.median, mi.frame))
bs = Hybrid.Entry(parent, 'Bin size', 5, '2')
bs.frame.grid(row = row, column = 0, sticky = 'w')
row += 1
self.binsize = bs.variable
bs.entry.bind('<KeyPress-Return>', self.filter_cb)
fw.append((self.bin, bs.frame))
sf = Tkinter.Frame(parent)
sf.grid(row = row, column = 0, sticky = 'w')
row += 1
fw.append((self.scale, sf))
sh = Hybrid.Entry(sf, 'Shift', 5, '0')
sh.frame.grid(row = 0, column = 0, sticky = 'w')
self.shift = sh.variable
sh.entry.bind('<KeyPress-Return>', self.filter_cb)
sc = Hybrid.Entry(sf, 'Scale', 5, '1')
sc.frame.grid(row = 0, column = 1, sticky = 'w')
self.scale_factor = sc.variable
sc.entry.bind('<KeyPress-Return>', self.filter_cb)
vt = Hybrid.Option_Menu(sf, 'Value type', 'same', 'int8', 'uint8', 'int16', 'uint16', 'int32', 'uint32', 'float32', 'float64')
vt.frame.grid(row = 0, column = 2, sticky = 'w')
self.value_type = vt.variable
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row = row, column = 0, sticky = 'news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row = orow, column = 1, sticky = 'e')
sr = Hybrid.Checkbutton(opf, 'Displayed subregion only', True)
sr.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.use_subregion = sr.variable
ss = Hybrid.Checkbutton(opf, 'Displayed subsampling only', False)
ss.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.use_step = ss.variable
ta = Hybrid.Checkbutton(opf, 'Adjust threshold for constant volume', True)
ta.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.adjust_thresholds = ta.variable
iu = Hybrid.Checkbutton(opf, 'Immediate update', False)
iu.button.grid(row = orow, column = 0, sticky = 'w')
orow += 1
self.immediate_update = iu.variable
self.filter_type_changed_cb()
self.set_scale_range(initial = True)
def fillInUI(self, parent):
self.plot = None
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
from chimera.preferences import addCategory, HiddenCategory
prefs = addCategory("SAXS",
HiddenCategory,
optDict={'saxs executable': ''})
self.preferences = prefs
import Tkinter
from CGLtk import Hybrid
from chimera import widgets as w
mm = w.ExtendedMoleculeOptionMenu(
parent,
label_text='Molecule ',
labelpos='w',
labels=['selected atoms', 'all molecules'])
mm.grid(row=row, column=0, sticky='w')
row += 1
self.molecule_menu = mm
ep = Hybrid.Entry(parent, 'Experimental profile ', 25, browse=True)
ep.frame.grid(row=row, column=0, sticky='ew')
row += 1
self.experimental_profile = ep.variable
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
np = Hybrid.Checkbutton(opf, 'Use new plot window', False)
np.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.new_plot = np.variable
ex = Hybrid.Entry(opf,
'Executable ',
25,
initial=prefs['saxs executable'],
browse=True)
ex.frame.grid(row=orow, column=0, sticky='ew')
orow += 1
ex.entry.xview('end')
self.executable = ex.variable
def fillInUI(self, parent):
self.morph_maps = {} # Writable maps for pairs of end-point maps.
self.default_f_range = (0.0, 1.0, 0.1)
self.play_stop_button = self.buttonWidgets['Play']
import Tkinter
from CGLtk import Hybrid
frame = parent
frame.columnconfigure(0, weight=1)
row = 0
h = Tkinter.Label(parent, text='Interpolate between two maps')
h.grid(row=row, column=0, sticky='w')
row += 1
from VolumeViewer import volume_list, Volume_Menu
vlist = volume_list()
vm1 = Volume_Menu(parent,
'First map',
open_button=True,
show_on_open=True)
vm1.frame.grid(row=row, column=0, sticky='w')
if len(vlist) >= 1:
vm1.set_volume(vlist[0])
row += 1
self.map_menu_1 = vm1
vm2 = Volume_Menu(parent,
'Second map',
open_button=True,
show_on_open=True)
vm2.frame.grid(row=row, column=0, sticky='w')
if len(vlist) >= 2:
vm2.set_volume(vlist[1])
row += 1
self.map_menu_2 = vm2
self.scale = Hybrid.Scale(parent, 'Fraction ', 0.0, 1.0, 0.01, 0)
self.scale.frame.grid(row=row, column=0, sticky='ew')
self.scale.callback(self.scale_changed_cb)
self.scale.entry.bind('<KeyPress-Return>', self.scale_changed_cb)
row += 1
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
fr = Tkinter.Frame(opf)
fr.grid(row=orow, column=0, sticky='w')
orow += 1
fmin, fmax, fstep = self.default_f_range
fn = Hybrid.Entry(fr, 'Movie start ', 5, fmin)
fn.frame.grid(row=0, column=0, sticky='w')
fx = Hybrid.Entry(fr, ' end ', 5, fmax)
fx.frame.grid(row=0, column=1, sticky='w')
fs = Hybrid.Entry(fr, ' step ', 5, fstep)
fs.frame.grid(row=0, column=2, sticky='w')
self.f_range_variables = (fn.variable, fx.variable, fs.variable)
um = Hybrid.Checkbutton(opf, 'Undisplay original maps', True)
um.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.undisplay_maps = um.variable
mu = Hybrid.Checkbutton_Entries(opf, False,
'Multiplier for second map',
(4, '1.0'))
mu.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_multiplier, self.map_2_multiplier = mu.variables
ta = Hybrid.Checkbutton(opf, 'Adjust threshold for constant volume',
False)
ta.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.adjust_thresholds = ta.variable
am = Hybrid.Checkbutton(opf,
'Add to first map instead of interpolating',
False)
am.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.add_maps = am.variable
am.callback(self.add_mode_cb)
rt = Hybrid.Checkbutton(opf, 'Round trip when recording movie', True)
rt.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.roundtrip = rt.variable
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
def fillInUI(self, parent):
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from VolumeViewer import Volume_Menu
ff = Tkinter.Frame(parent)
ff.grid(row=row, column=0, sticky='w')
row = row + 1
# Map selection (only Volumes)
fm = Volume_Menu(ff, 'Map: ')
fm.frame.grid(row=0, column=0, sticky='w')
self.map_menu = fm
# Resolution
rs = Hybrid.Entry(ff, 'Resolution ', 5)
rs.frame.grid(row=0, column=1, sticky='w')
self.resolution = rs.variable
# Cut-off
co = Hybrid.Entry(ff, 'Cut-off level ', 10)
co.frame.grid(row=0, column=2, sticky='w')
self.cutoff = co.variable
self.save_button = Tkinter.Button(ff,
text="From Volume Viewer",
font=self.arialBondF,
height=1,
command=self.get_cutoff)
self.save_button.grid(row=0, column=3, sticky='w')
hf = Tkinter.Frame(parent)
hf.grid(row=row, column=0, sticky='w')
row += 1
# Space
msg = Tkinter.Label(hf, anchor='w', justify='left')
msg.grid(row=2, column=0, sticky='ew')
row = row + 1
self.message_label = msg
# PDB's panel
self.pdbs = Tkinter.Frame(parent)
self.pdbs.grid(row=3, column=0, sticky='ew')
self.pdbs.columnconfigure(1, weight=1)
from chimera.widgets import MoleculeScrolledListBox, \
ModelOptionMenu
self.modelList = MoleculeScrolledListBox(
self.pdbs,
labelpos='nw',
label_text="Target PDBs to be fitted:",
listbox_selectmode='extended',
listbox_height=11)
self.modelList.grid(row=row, column=0, sticky='nsew')
self.pdbs.rowconfigure(row, weight=1)
self.pdbs.columnconfigure(0, weight=1)
self.modelList1 = MoleculeScrolledListBox(
self.pdbs,
labelpos='nw',
label_text="Target PDBs to be fixed:",
listbox_selectmode='extended',
listbox_height=11)
self.modelList1.grid(row=row, column=1, sticky='nsew')
self.pdbs.rowconfigure(row, weight=1)
self.pdbs.columnconfigure(0, weight=1)
row += 1
# Disable Results panel at first
self.results_button = self.buttonWidgets['Results']
self.results_button['state'] = 'disabled'
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
row = 0
import Tkinter
from CGLtk import Hybrid
from surfcaps import capper
c = capper()
cp = Hybrid.Checkbutton(parent, 'Cap surfaces at clip planes',
c.caps_shown())
cp.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.show_caps = cp.variable
self.show_caps.add_callback(self.settings_changed_cb)
ccf = Tkinter.Frame(parent)
ccf.grid(row=row, column=0, sticky='w')
row = row + 1
ucc = Hybrid.Checkbutton(ccf, 'Use cap color ',
not c.cap_color is None)
ucc.button.grid(row=0, column=0, sticky='w')
self.use_cap_color = ucc.variable
self.use_cap_color.add_callback(self.settings_changed_cb)
from CGLtk.color import ColorWell
cc = ColorWell.ColorWell(ccf, callback=self.settings_changed_cb)
self.cap_color = cc
rgba = c.cap_color
if rgba is None:
rgba = (1, 1, 1, 1)
cc.showColor(rgba, doCallback=0)
cc.grid(row=0, column=1, sticky='w')
cs = Hybrid.Radiobutton_Row(parent, 'Cap style: ', ('solid', 'mesh'),
self.settings_changed_cb)
cs.frame.grid(row=row, column=0, sticky='w')
if c.mesh_style: style = 'mesh'
else: style = 'solid'
cs.variable.set(style, invoke_callbacks=False)
row = row + 1
self.cap_style = cs.variable
sf = Hybrid.Entry(parent, 'Mesh subdivision factor', 4,
'%g' % c.subdivision_factor)
sf.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.subdivision_factor = sf.variable
sf.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cd = Hybrid.Entry(parent, 'Cap to clip plane distance', 5,
'%.3g' % c.cap_offset)
cd.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.cap_offset = cd.variable
cd.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
chimera.replyobj.status("Capping surfaces might reduce responsiveness",
color="orange red")
def fillInUI(self, parent):
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
rs = Hybrid.Scale(parent, ' Radius ', 0, 1000, .1, '')
rs.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
# rs.callback(self.flatten_cb)
rs.entry.bind('<KeyPress-Return>', self.flatten_cb)
self.radius = rs.variable
# Mesh
mf = Tkinter.Frame(parent)
mf.grid(row=row, column=0, sticky='w')
row = row + 1
sm = Hybrid.Checkbutton(mf, 'Show triangle mesh,', True)
sm.button.grid(row=0, column=0, sticky='w')
self.show_mesh = sm.variable
self.show_mesh.add_callback(self.show_mesh_cb)
cl = Tkinter.Label(mf, text='color')
cl.grid(row=0, column=1, sticky='w')
initial_color = (.5, .5, .5, 1)
from CGLtk.color import ColorWell
mc = ColorWell.ColorWell(mf, callback=self.mesh_color_changed_cb)
mc.grid(row=0, column=2, sticky='w')
self.mesh_color = mc
mc.showColor(initial_color)
mo = Hybrid.Entry(mf, ' z offset ', 5, '0')
mo.frame.grid(row=0, column=3, sticky='w')
self.mesh_offset = mo.variable
mo.entry.bind('<KeyPress-Return>', self.mesh_offset_changed_cb)
# Orthographic camera mode.
import chimera
c = chimera.viewer.camera
oc = Hybrid.Checkbutton(parent, 'Use orthographic camera mode.',
c.ortho)
oc.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.orthographic = oc.variable
self.orthographic.add_callback(self.orthographic_cb)
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
def fillInUI(self, parent):
self.key_buffer = ''
self.key_callback_registered = None
self.time_out_id = None
import Accelerators
self.preferences = Accelerators.accelerator_preferences_category()
self.top = parent.winfo_toplevel()
self.top.wm_withdraw() # Do not show automatically when dialog created
parent.columnconfigure(0, weight = 1)
row = 0
import Tkinter
from CGLtk import Hybrid
al = Hybrid.Scrollable_List(parent, 'Available shortcuts', 10,
self.accelerator_selection_cb)
self.accelerator_listbox = al.listbox
al.frame.grid(row = row, column = 0, sticky = 'news')
parent.rowconfigure(row, weight = 1)
row = row + 1
fi = Hybrid.Entry(parent, 'Filter list ', 20)
fi.entry.bind('<KeyRelease>', self.filter_cb)
fi.frame.grid(row = row, column = 0, sticky = 'ew')
self.filter_text = fi.variable
row = row + 1
ao = Hybrid.Checkbutton(parent, 'Enable keyboard shortcuts', False)
ao.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ao.callback(self.activate_accelerators_cb)
self.active_var = ao.variable
from chimera import statusline
sl = Hybrid.Checkbutton(parent, 'Show main window status line',
statusline.status_line_shown())
sl.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
sl.callback(self.status_line_cb)
self.status_line_var = sl.variable
from chimera import triggers
triggers.addHandler('status line', self.status_line_visibility_cb, None)
rf = Tkinter.Frame(parent)
rf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
rb = Tkinter.Button(rf, text = 'Load', command = self.load_cb)
rb.grid(row = 0, column = 0, sticky = 'w')
afl = Tkinter.Label(rf, text = ' shortcuts file')
afl.grid(row = 0, column = 1, sticky = 'w')
path = self.preferences['path'] # Path might be None
af = Hybrid.Entry(parent, '', 20, path)
af.entry.xview_moveto(1) # show right most part of path
af.entry.bind('<KeyPress-Return>', self.load_cb)
af.frame.grid(row = row, column = 0, sticky = 'ew')
row = row + 1
self.accelerator_file = af.variable
tot = self.preferences['time out']
tm = Hybrid.Entry(parent, 'Key press time-out (seconds) ', 3, tot)
tm.frame.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.time_out = tm.variable
self.time_out.add_callback(self.time_out_changed_cb)
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width = 30, anchor = 'w', justify = 'left')
msg.grid(row = row, column = 0, sticky = 'ew')
row = row + 1
self.message_label = msg
self.load_accelerators()
def fillInUI(self, parent):
self.model = None
self.position_handler = None
self.screen_position = (-.6, -.6)
self.last_xyz_position = None
self.frozen_model_list = []
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
row = 0
import Tkinter
from CGLtk import Hybrid
sb = Hybrid.Checkbutton(parent, 'Show scale bar', 0)
sb.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.show_scalebar = sb.variable
self.show_scalebar.add_callback(self.settings_changed_cb)
bf = Tkinter.Frame(parent)
bf.grid(row=row, column=0, sticky='w')
row = row + 1
le = Hybrid.Entry(bf, 'Length ', 5, '10')
le.frame.grid(row=0, column=0, sticky='w')
le.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.bar_length = le.variable
te = Hybrid.Entry(bf, ' Thickness', 3, '1')
te.frame.grid(row=0, column=1, sticky='w')
te.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.bar_thickness = te.variable
cl = Tkinter.Label(bf, text=' Color ')
cl.grid(row=0, column=2, sticky='w')
from CGLtk.color import ColorWell
bc = ColorWell.ColorWell(bf, callback=self.settings_changed_cb)
self.bar_color = bc
bc.showColor((1, 1, 1), doCallback=0)
bc.grid(row=0, column=3, sticky='w')
lf = Tkinter.Frame(parent)
lf.grid(row=row, column=0, sticky='w')
row = row + 1
# \u00C5 is the Angstrom symbol
lb = Hybrid.Entry(lf, 'Label ', 5, u'# \u00C5')
lb.frame.grid(row=0, column=0, sticky='w')
lb.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_text = lb.variable
xo = Hybrid.Entry(lf, ' Offset ', 3, '')
xo.frame.grid(row=0, column=1, sticky='w')
xo.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_x_offset = xo.variable
yo = Hybrid.Entry(lf, '', 3, '')
yo.frame.grid(row=0, column=2, sticky='w')
yo.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_y_offset = yo.variable
ct = Tkinter.Label(lf, text=' Color ')
ct.grid(row=0, column=3, sticky='w')
from CGLtk.color import ColorWell
lc = ColorWell.ColorWell(lf, callback=self.settings_changed_cb)
self.label_color = lc
lc.showColor((1, 1, 1), doCallback=0)
lc.grid(row=0, column=4, sticky='w')
ore = Hybrid.Radiobutton_Row(parent, 'Orientation ',
('horizontal', 'vertical'),
self.orientation_cb)
ore.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.orientation = ore.variable
self.orientation.set('horizontal', invoke_callbacks=0)
pf = Tkinter.Frame(parent)
pf.grid(row=row, column=0, sticky='w')
row = row + 1
pp = Hybrid.Checkbutton(pf, 'Preserve screen position', 1)
pp.button.grid(row=0, column=0, sticky='w')
self.preserve_position = pp.variable
self.preserve_position.add_callback(self.settings_changed_cb)
xp = Hybrid.Entry(pf, '', 5, '')
xp.frame.grid(row=0, column=1, sticky='w')
xp.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.screen_x_position = xp.variable
yp = Hybrid.Entry(pf, '', 5, '')
yp.frame.grid(row=0, column=2, sticky='w')
yp.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.screen_y_position = yp.variable
self.set_screen_position_entries()
mb = Hybrid.Checkbutton(parent,
'Move scale bar with data models locked', 0)
mb.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.move_scalebar = mb.variable
self.move_scalebar.add_callback(self.move_scalebar_cb)
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
chimera.triggers.addHandler(chimera.CLOSE_SESSION,
self.close_session_cb, None)
def fillInUI(self, parent):
self.molecules = []
self.add_model_handler = None
self.remove_model_handler = None
import Tkinter
from CGLtk import Hybrid
row = 0
mm = Hybrid.Option_Menu(parent, 'Molecule: ')
mm.frame.grid(row=row, column=0, sticky='w')
row = row + 1
mm.add_callback(self.molecule_menu_cb)
self.molecule_menu = mm
labels = []
for text in (
'Space group: ',
'Cell size: ',
'Cell angles: ',
'Number of SMTRY matrices: ',
'Number of space group symmetries: ',
'Number of MTRIX matrices: ',
):
lbl = Tkinter.Label(parent, text=text)
lbl.grid(row=row, column=0, sticky='w')
row = row + 1
labels.append(lbl)
(
self.space_group,
self.cell_size,
self.cell_angles,
self.smtry_count,
self.sg_smtry_count,
self.mtrix_count,
) = labels
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
usr = Hybrid.Checkbutton(opf, 'Use SMTRY records in PDB header', True)
usr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_smtry_records = usr.variable
ucr = Hybrid.Checkbutton(
opf, 'Use CRYST1 record if SMTRY records are missing', True)
ucr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_cryst1_smtry = ucr.variable
umr = Hybrid.Checkbutton(
opf, 'Use MTRIX records for non-crystallographic symmetry', True)
umr.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.use_mtrix_records = umr.variable
co = Hybrid.Entry(opf, 'Cell origin ', 12, '0 0 0')
co.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.grid_orig = co.variable
co.entry.bind('<KeyPress-Return>', self.origin_change_cb)
nc = Hybrid.Entry(opf, 'Number of cells ', 12, '1 1 1')
nc.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.ncells = nc.variable
nc.entry.bind('<KeyPress-Return>', self.make_unit_cell_cb)
br = Hybrid.Button_Row(parent, '', (
('Make copies', self.make_unit_cell_cb),
('Outline', self.show_outline_cb),
('Delete copies', self.close_unit_cell_cb),
))
br.frame.grid(row=row, column=0, sticky='e')
row = row + 1
def fillInUI(self, parent):
self.sel_handler = None
self.last_selected = set()
import Tkinter
from CGLtk import Hybrid
top = parent.winfo_toplevel()
menubar = Tkinter.Menu(top, type="menubar", tearoff=False)
top.config(menu=menubar)
file_menu_entries = (('Export...', self.export_cb), )
fmenu = Hybrid.cascade_menu(menubar, 'File', file_menu_entries)
self.columnMenu = Tkinter.Menu(menubar)
menubar.add_cascade(label="Columns", menu=self.columnMenu)
from chimera.tkgui import aquaMenuBar
aquaMenuBar(menubar, parent, row=0)
row = 1
columns = (
('region', lambda r: r.rid),
('grid points', lambda r: r.point_count()),
('grouped', lambda r: len(r.children())),
('has surface', lambda r: 1 if r.has_surface() else 0),
('contacts', lambda r: len(r.contacting_regions())),
('edge distance', lambda r: r.edge_distance()),
('bounds', lambda r: tuple(r.bounds()[0]) + tuple(r.bounds()[1]),
'%d,%d,%d,%d,%d,%d', False),
)
self.computed_attributes = dict([c[:2] for c in columns])
self.keys = set([c[0] for c in columns])
defaults = dict([(c[0], True) for c in columns])
prefs = {}
mi = (self.columnMenu, prefs, defaults, True)
from CGLtk.Table import SortableTable
self.attribute_table = t = SortableTable(parent, menuInfo=mi)
for cspec in columns:
name, func = cspec[:2]
format = cspec[2] if len(cspec) >= 3 else format_item
display = cspec[3] if len(cspec) >= 4 else True
t.addColumn(name,
func,
format=format,
display=display,
font='TkFixedFont',
refresh=False)
self.add_columns() # Additional region attributes.
t.setData([])
t.launch(browseCmd=self.table_line_selected)
t.grid(row=row, column=0, sticky="nsew")
parent.rowconfigure(row, weight=1)
parent.columnconfigure(0, weight=1)
row += 1
naf = Tkinter.Frame(parent)
naf.grid(row=row, column=0, sticky='new')
naf.columnconfigure(1, weight=1)
row += 1
ke = Hybrid.Entry(naf, 'Set attribute ', 15)
ke.frame.grid(row=0, column=0, sticky='w')
self.key_name = ke.variable
ke.entry.bind('<KeyPress-Return>', self.new_value_cb)
ve = Hybrid.Entry(naf, ' to value ', 15)
ve.frame.grid(row=0, column=1, sticky='ew')
self.value = ve.variable
ve.entry.bind('<KeyPress-Return>', self.new_value_cb)
ol = Tkinter.Label(naf, text=' or ')
ol.grid(row=0, column=2, sticky='e')
sb = Tkinter.Button(naf, text='snapshot', command=self.snapshot_cb)
sb.grid(row=0, column=3, sticky='e')
fl = Hybrid.Checkbutton_Entries(parent, False, 'Filter list ',
(50, 'grid_points > 1000'))
fl.frame.grid(row=row, column=0, sticky='new')
row += 1
self.use_filter, self.filter_text = fl.variables
self.use_filter.add_callback(self.filter_cb)
e = fl.entries[0]
fl.frame.columnconfigure(1, weight=1)
e.grid(sticky='ew')
e.bind('<KeyPress-Return>', self.filter_cb)
op = Hybrid.Popup_Panel(parent, resize_dialog=False)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.optionsPanel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=0, sticky='e')
l = Tkinter.Label(opf, text='Options', font='TkCaptionFont')
l.grid(column=0, row=orow, sticky='w', pady=5)
orow += 1
ss = Hybrid.Checkbutton(opf, 'Show selected region surface', False)
ss.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.show_selected = ss.variable
msg = Tkinter.Label(parent, width=60, anchor='w', justify='left')
msg.grid(column=0, row=row, sticky='ew')
self.msg = msg
self.Update()
def fillInUI(self, parent):
self.averaging_interval = 1 # seconds
self.target_fps = 10.0 # frames per second
self.standard_window_size = (512, 512)
self.initial_size = 32
self.frame_rate_timer = Frame_Rate_Timer(self.report_actual_frame_rate,
self.averaging_interval)
hb = self.buttonWidgets['Halt']
self.halt_button = hb
hb['state'] = 'disabled'
rs = self.buttonWidgets['Report Scores']
self.report_button = rs
rs['state'] = 'disabled'
import Tkinter
from CGLtk import Hybrid
row = 0
parent.columnconfigure(0, weight=1)
rt = Hybrid.Scrollable_Text(parent, None, 15, horizontal_scroll=False)
rt.text['width'] = 50
rt.text['wrap'] = 'word'
self.results_box = rt.text
rt.frame.grid(row=row, column=0, sticky='news')
parent.rowconfigure(row, weight=1)
row = row + 1
descrip = (
'Running benchmarks takes 5-10 minutes to complete.\n\n' +
'Measure graphics card and CPU performance ' +
'for volume data rendering. The scores ' +
'give the edge size of a cubic volume data ' +
'array such that rendering or contouring or recoloring ' +
'can be performed %.0f ' % self.target_fps +
'times per second.\n\n' +
'The surface and mesh benchmarks measure the ' +
'rendering rates for triangles and lines respectively. ' +
'The contour benchmark measures ' +
'CPU and memory performance. ' +
'The solid benchmark measures 2 dimensional texture ' +
'mapping performance. The recolor benchmark measures ' +
'bandwidth to the graphics card.\n\n' +
'The frame rate buttons give the redraw ' +
'rate for your currently displayed view ' +
'reported at one second intervals.\n\n' +
'The molecule benchmark measures and reports frames per '
'second when displaying different representations of molecules, '
'and operations per second for the Ops call.\n\n'
'For an accurate benchmark, please do not use the CPU for other '
'tasks while benchmarks are running, and leave the entire Chimera '
'graphics window visible.\n\n')
self.show_result(descrip)
self.results_box.see('1.0')
frf = Tkinter.Frame(parent)
frf.grid(row=row, column=0, sticky='w')
row = row + 1
mr = Hybrid.Checkbutton(frf, 'Measure frame rate continuously or ',
False)
mr.button.grid(row=0, column=0, sticky='w')
self.monitor_frame_rate = mr.variable
self.monitor_frame_rate.add_callback(self.monitor_cb)
frb = Tkinter.Button(frf,
text='one time',
command=self.actual_frame_rate)
frb.grid(row=0, column=1, sticky='w')
it = Hybrid.Checkbutton(parent, 'Show individual test controls', False)
it.button.grid(row=row, column=0, sticky='w')
row = row + 1
itf = Tkinter.Frame(parent)
itf.grid(row=row, column=0, sticky='w')
row = row + 1
trow = 0
it.popup_frame(itf)
it.popup_frame_cb() # Hide panel
bmb = Hybrid.Button_Row(itf, 'Run',
(('molecule', self.molSphere_benchmark),
('surface', self.surface_benchmark),
('mesh', self.mesh_benchmark),
('contour', self.contour_benchmark),
('solid', self.solid_benchmark),
('recolor', self.recolor_benchmark)))
bmb.frame.grid(row=trow, column=0, sticky='w')
trow += 1
smf = Tkinter.Frame(itf)
smf.grid(row=trow, column=0, sticky='w')
trow += 1
sml = Hybrid.Entry(smf, 'Show standard model, size ', 4,
repr(self.initial_size))
sml.frame.grid(row=0, column=0, sticky='w')
self.standard_model_size_var = sml.variable
smb = Hybrid.Button_Row(smf, ', ', (
('surface', self.standard_surface),
('mesh', self.standard_mesh),
('solid', self.standard_solid),
))
smb.frame.grid(row=0, column=1, sticky='w')
sv = Hybrid.Button_Row(itf, 'Set standard view', (
('camera', self.set_standard_camera_parameters),
('window size', self.set_standard_window_size),
))
sv.frame.grid(row=trow, column=0, sticky='w')
trow += 1
sf = Tkinter.Frame(parent)
sf.grid(row=row, column=0, sticky='w')
row += 1
sb = Tkinter.Button(sf, text='Show', command=self.show_scores_web_page)
sb.grid(row=0, column=0, sticky='w')
sl = Tkinter.Label(sf, text=' scores reported by others')
sl.grid(row=0, column=1, sticky='w')
def fillInUI(self, parent):
self.last_xy = None
import Tkinter
from CGLtk import Hybrid
parent.columnconfigure(0, weight = 1)
row = 0
cr = Hybrid.Checkbutton(parent, 'Constrain mouse rotations', 0)
cr.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.constrain_rotations = cr.variable
cr.callback(self.constrain_rotation_cb)
raf = Tkinter.Frame(parent)
raf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ra = Hybrid.Entry(raf, 'Axis ', 8, '0 0 1')
ra.frame.grid(row = 0, column = 0, sticky = 'w')
self.rot_axis = ra.variable
rotx_cb = lambda v=self.rot_axis: v.set('1 0 0')
roty_cb = lambda v=self.rot_axis: v.set('0 1 0')
rotz_cb = lambda v=self.rot_axis: v.set('0 0 1')
rab = Hybrid.Button_Row(raf, ' ',
(('x', rotx_cb),
('y', roty_cb),
('z', rotz_cb)))
rab.frame.grid(row = 0, column = 1, sticky = 'w')
rof = Tkinter.Frame(parent)
rof.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ro = Hybrid.Entry(rof, 'Origin ', 8, '0 0 0')
ro.frame.grid(row = 0, column = 0, sticky = 'w')
self.rot_origin = ro.variable
zorigin_cb = lambda v=self.rot_origin: v.set('0 0 0')
rob = Hybrid.Button_Row(rof, ' ',
(('zero', zorigin_cb),
('center', self.set_rotation_origin_at_center),))
rob.frame.grid(row = 0, column = 1, sticky = 'w')
sep = Tkinter.Frame(parent, relief = Tkinter.GROOVE,
borderwidth=1, height=2)
sep.grid(row = row, column = 0, sticky = 'ew', pady = 10)
row = row + 1
tr = Hybrid.Checkbutton(parent, 'Constrain mouse translations', 0)
tr.button.grid(row = row, column = 0, sticky = 'w')
row = row + 1
self.constrain_translations = tr.variable
tr.callback(self.constrain_translation_cb)
taf = Tkinter.Frame(parent)
taf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
ta = Hybrid.Entry(taf, 'Axis ', 8, '0 0 1')
ta.frame.grid(row = 0, column = 0, sticky = 'w')
self.trans_axis = ta.variable
tx_cb = lambda v=self.trans_axis: v.set('1 0 0')
ty_cb = lambda v=self.trans_axis: v.set('0 1 0')
tz_cb = lambda v=self.trans_axis: v.set('0 0 1')
tab = Hybrid.Button_Row(taf, ' ',
(('x', tx_cb),
('y', ty_cb),
('z', tz_cb)))
tab.frame.grid(row = 0, column = 1, sticky = 'w')
ttf = Tkinter.Frame(parent)
ttf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
tt = Hybrid.Option_Menu(ttf, 'Allow only ',
'parallel', 'perpendicular')
tt.variable.set('parallel')
tt.frame.grid(row = 0, column = 0, sticky = 'w')
self.translation_type = tt.variable
tl = Tkinter.Label(ttf, text = ' motion')
tl.grid(row = 0, column = 1, sticky = 'w')
sep = Tkinter.Frame(parent, relief = Tkinter.GROOVE,
borderwidth=1, height=2)
sep.grid(row = row, column = 0, sticky = 'ew', pady = 10)
row = row + 1
rl = Tkinter.Label(parent, text = 'Axis and origin relative to')
rl.grid(row = row, column = 0, sticky = 'w')
row = row + 1
mmf = Tkinter.Frame(parent)
mmf.grid(row = row, column = 0, sticky = 'w')
row = row + 1
mm = Hybrid.Option_Menu(mmf, 'model ')
mm.frame.grid(row = 0, column = 0, sticky = 'w')
self.model_menu = mm
self.model_name = mm.variable
from chimera import openModels
openModels.addAddHandler(self.model_list_changed_cb, None)
openModels.addRemoveHandler(self.model_list_changed_cb, None)
ml = Tkinter.Label(mmf, text = ' coordinates.')
ml.grid(row = 0, column = 1, sticky = 'w')
self.update_model_menu()
self.register_mouse_modes()