def fillInUI(self, parent):
self.requested_halt = False
self.xform_handler = None
self.last_relative_xform = None
t = parent.winfo_toplevel()
self.toplevel_widget = t
t.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
from VolumeViewer import Volume_Menu
ff = Tkinter.Frame(parent)
ff.grid(row=row, column=0, sticky='w')
row = row + 1
from chimera.widgets import ModelOptionMenu
om = ModelOptionMenu(ff,
labelpos='w',
label_text='Fit ',
listFunc=fit_object_models,
sortFunc=compare_fit_objects,
command=self.object_chosen_cb)
om.grid(row=0, column=0, sticky='w')
self.object_menu = om
fm = Volume_Menu(ff, ' in map ')
fm.frame.grid(row=0, column=1, sticky='w')
self.map_menu = fm
gf = Tkinter.Frame(parent)
gf.grid(row=row, column=0, sticky='w')
row += 1
cl = Tkinter.Label(gf, text='Correlation')
cl.grid(row=0, column=0, sticky='w')
cv = Tkinter.Label(gf,
width=6,
anchor='w',
relief=Tkinter.SUNKEN,
borderwidth=2)
cv.grid(row=0, column=1, padx=5, sticky='w')
self.corr_label = cv
al = Tkinter.Label(gf, text='Average map value')
al.grid(row=0, column=2, sticky='w')
av = Tkinter.Label(gf,
width=6,
anchor='w',
relief=Tkinter.SUNKEN,
borderwidth=2)
av.grid(row=0, column=3, padx=5, sticky='w')
self.ave_label = av
ub = Tkinter.Button(gf, text='Update', command=self.update_metric_cb)
ub.grid(row=0, column=4, sticky='w')
op = Hybrid.Popup_Panel(parent)
opf = op.frame
opf.grid(row=row, column=0, sticky='news')
opf.grid_remove()
opf.columnconfigure(0, weight=1)
self.options_panel = op.panel_shown_variable
row += 1
orow = 0
cb = op.make_close_button(opf)
cb.grid(row=orow, column=1, sticky='e')
ru = Hybrid.Checkbutton(opf, 'Real-time correlation / average update',
False)
ru.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.realtime_update = ru.variable
ru.callback(self.realtime_cb)
sm = Hybrid.Checkbutton_Entries(
opf, False, 'Use map simulated from atoms, resolution ', (4, ''))
sm.frame.grid(row=orow, column=0, sticky='nw')
orow += 1
self.simulate_map, self.map_resolution = sm.variables
self.simulate_map.add_callback(self.simulate_map_cb)
sm.entries[0].bind('<KeyPress-Return>', self.simulate_resolution_cb)
dt = Hybrid.Checkbutton(
opf, 'Use only data above contour level from first map', True)
dt.button.grid(row=orow, column=0, sticky='w')
orow += 1
dt.button['state'] = 'disabled'
self.limit_data = dt
self.above_threshold = dt.variable
opt = Hybrid.Radiobutton_Row(opf, 'Optimize ',
('overlap', 'correlation'))
opt.frame.grid(row=orow, column=0, sticky='w')
orow += 1
self.optimize = opt.variable
self.opt_widget = opt
cam = Hybrid.Checkbutton(
opf, 'Correlation calculated about mean data value', False)
cam.button.grid(row=orow, column=0, sticky='w')
orow += 1
cam.button['state'] = 'disabled'
self.cam_widget = cam
self.corr_about_mean = cam.variable
al = Hybrid.Checkbutton_Row(opf, 'Allow ', ('rotation', 'shift'))
al.frame.grid(row=orow, column=0, sticky='w')
orow += 1
ar, ash = [c.variable for c in al.checkbuttons]
ar.set(True)
ash.set(True)
self.allow_rotation = ar
self.allow_shift = ash
mm = Hybrid.Checkbutton(opf, 'Move whole molecules', True)
mm.button.grid(row=orow, column=0, sticky='w')
orow += 1
self.move_whole_molecules = mm.variable
self.mwm_button = mm.button
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
self.halt_button = self.buttonWidgets['Halt']
self.allow_halt(False)
self.update_gray_out()
self.activate_undo_redo()
def fillInUI(self, parent):
self.model = None
self.position_handler = None
self.screen_position = (-.6, -.6)
self.last_xyz_position = None
self.frozen_model_list = []
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
row = 0
import Tkinter
from CGLtk import Hybrid
sb = Hybrid.Checkbutton(parent, 'Show scale bar', 0)
sb.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.show_scalebar = sb.variable
self.show_scalebar.add_callback(self.settings_changed_cb)
bf = Tkinter.Frame(parent)
bf.grid(row=row, column=0, sticky='w')
row = row + 1
le = Hybrid.Entry(bf, 'Length ', 5, '10')
le.frame.grid(row=0, column=0, sticky='w')
le.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.bar_length = le.variable
te = Hybrid.Entry(bf, ' Thickness', 3, '1')
te.frame.grid(row=0, column=1, sticky='w')
te.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.bar_thickness = te.variable
cl = Tkinter.Label(bf, text=' Color ')
cl.grid(row=0, column=2, sticky='w')
from CGLtk.color import ColorWell
bc = ColorWell.ColorWell(bf, callback=self.settings_changed_cb)
self.bar_color = bc
bc.showColor((1, 1, 1), doCallback=0)
bc.grid(row=0, column=3, sticky='w')
lf = Tkinter.Frame(parent)
lf.grid(row=row, column=0, sticky='w')
row = row + 1
# \u00C5 is the Angstrom symbol
lb = Hybrid.Entry(lf, 'Label ', 5, u'# \u00C5')
lb.frame.grid(row=0, column=0, sticky='w')
lb.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_text = lb.variable
xo = Hybrid.Entry(lf, ' Offset ', 3, '')
xo.frame.grid(row=0, column=1, sticky='w')
xo.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_x_offset = xo.variable
yo = Hybrid.Entry(lf, '', 3, '')
yo.frame.grid(row=0, column=2, sticky='w')
yo.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.label_y_offset = yo.variable
ct = Tkinter.Label(lf, text=' Color ')
ct.grid(row=0, column=3, sticky='w')
from CGLtk.color import ColorWell
lc = ColorWell.ColorWell(lf, callback=self.settings_changed_cb)
self.label_color = lc
lc.showColor((1, 1, 1), doCallback=0)
lc.grid(row=0, column=4, sticky='w')
ore = Hybrid.Radiobutton_Row(parent, 'Orientation ',
('horizontal', 'vertical'),
self.orientation_cb)
ore.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.orientation = ore.variable
self.orientation.set('horizontal', invoke_callbacks=0)
pf = Tkinter.Frame(parent)
pf.grid(row=row, column=0, sticky='w')
row = row + 1
pp = Hybrid.Checkbutton(pf, 'Preserve screen position', 1)
pp.button.grid(row=0, column=0, sticky='w')
self.preserve_position = pp.variable
self.preserve_position.add_callback(self.settings_changed_cb)
xp = Hybrid.Entry(pf, '', 5, '')
xp.frame.grid(row=0, column=1, sticky='w')
xp.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.screen_x_position = xp.variable
yp = Hybrid.Entry(pf, '', 5, '')
yp.frame.grid(row=0, column=2, sticky='w')
yp.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
self.screen_y_position = yp.variable
self.set_screen_position_entries()
mb = Hybrid.Checkbutton(parent,
'Move scale bar with data models locked', 0)
mb.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.move_scalebar = mb.variable
self.move_scalebar.add_callback(self.move_scalebar_cb)
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
chimera.triggers.addHandler(chimera.CLOSE_SESSION,
self.close_session_cb, None)
def fillInUI(self, parent):
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
row = 0
import Tkinter
from CGLtk import Hybrid
from surfcaps import capper
c = capper()
cp = Hybrid.Checkbutton(parent, 'Cap surfaces at clip planes',
c.caps_shown())
cp.button.grid(row=row, column=0, sticky='w')
row = row + 1
self.show_caps = cp.variable
self.show_caps.add_callback(self.settings_changed_cb)
ccf = Tkinter.Frame(parent)
ccf.grid(row=row, column=0, sticky='w')
row = row + 1
ucc = Hybrid.Checkbutton(ccf, 'Use cap color ',
not c.cap_color is None)
ucc.button.grid(row=0, column=0, sticky='w')
self.use_cap_color = ucc.variable
self.use_cap_color.add_callback(self.settings_changed_cb)
from CGLtk.color import ColorWell
cc = ColorWell.ColorWell(ccf, callback=self.settings_changed_cb)
self.cap_color = cc
rgba = c.cap_color
if rgba is None:
rgba = (1, 1, 1, 1)
cc.showColor(rgba, doCallback=0)
cc.grid(row=0, column=1, sticky='w')
cs = Hybrid.Radiobutton_Row(parent, 'Cap style: ', ('solid', 'mesh'),
self.settings_changed_cb)
cs.frame.grid(row=row, column=0, sticky='w')
if c.mesh_style: style = 'mesh'
else: style = 'solid'
cs.variable.set(style, invoke_callbacks=False)
row = row + 1
self.cap_style = cs.variable
sf = Hybrid.Entry(parent, 'Mesh subdivision factor', 4,
'%g' % c.subdivision_factor)
sf.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.subdivision_factor = sf.variable
sf.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
cd = Hybrid.Entry(parent, 'Cap to clip plane distance', 5,
'%.3g' % c.cap_offset)
cd.frame.grid(row=row, column=0, sticky='w')
row = row + 1
self.cap_offset = cd.variable
cd.entry.bind('<KeyPress-Return>', self.settings_changed_cb)
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
chimera.replyobj.status("Capping surfaces might reduce responsiveness",
color="orange red")
def fillInUI(self, parent):
self.default_radius = 100
self.surface_model = None
self.surface_piece = None
self.toplevel_widget = parent.winfo_toplevel()
self.toplevel_widget.withdraw()
parent.columnconfigure(0, weight=1)
row = 0
import Tkinter
from CGLtk import Hybrid
# Radius
rs = Hybrid.Scale(parent, 'Radius ', 1, 1000, 0.01,
self.default_radius)
rs.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
rs.callback(self.radius_changed_cb)
rs.entry.bind('<KeyPress-Return>', self.radius_changed_cb)
self.radius = rs
# Interpolation factor between icosahedron and sphere
sf = Hybrid.Scale(parent, 'Sphere factor ', 0, 1, .01, 0)
sf.frame.grid(row=row, column=0, sticky='ew')
row = row + 1
sf.callback(self.sphere_factor_changed_cb)
sf.entry.bind('<KeyPress-Return>', self.sphere_factor_changed_cb)
self.sphere_factor = sf
# Orientation menu
self.orient_222 = 'xyz 2-fold axes'
self.orient_222r = 'xyz 2-fold axes, alt'
self.orient_2n3 = 'x 2-fold, z 3-fold'
self.orient_2n3r = 'x 2-fold, z 3-fold, alt'
self.orient_2n5 = 'x 2-fold, z 5-fold'
self.orient_2n5r = 'x 2-fold, z 5-fold, alt'
self.orient_n25 = 'y 2-fold, z 5-fold'
self.orient_n25r = 'y 2-fold, z 5-fold, alt'
io = Hybrid.Option_Menu(parent, 'Orientation ', self.orient_222,
self.orient_222r, self.orient_2n3,
self.orient_2n3r, self.orient_2n5,
self.orient_2n5r, self.orient_n25,
self.orient_n25r)
io.frame.grid(row=row, column=0, sticky='w')
io.add_callback(self.show_cb)
row = row + 1
self.orientation = io.variable
# Subdivision factor
sf = Tkinter.Frame(parent)
sf.grid(row=row, column=0, sticky='w')
row = row + 1
sb = Hybrid.Entry(sf, 'Subdivision factor ', 5, '1')
sb.frame.grid(row=0, column=0, sticky='w')
self.subdivision_factor = sb.variable
sb.entry.bind('<KeyPress-Return>', self.show_cb)
sp = Tkinter.Label(sf, text='')
sp.grid(row=0, column=1, sticky='w')
self.subdivision_spacing = sp
# Surface style: filled, mesh
st = Hybrid.Radiobutton_Row(parent, 'Surface style: ',
('solid', 'mesh'), self.style_changed_cb)
st.frame.grid(row=row, column=0, sticky='w')
st.variable.set('mesh', invoke_callbacks=False)
row = row + 1
self.surface_style = st.variable
# Color
cf = Tkinter.Frame(parent)
cf.grid(row=row, column=0, sticky='w')
row = row + 1
cl = Tkinter.Label(cf, text='Color')
cl.grid(row=0, column=0, sticky='w')
initial_color = (.7, .7, .7, 1)
from CGLtk.color import ColorWell
cw = ColorWell.ColorWell(cf, callback=self.color_changed_cb)
cw.showColor(initial_color)
cw.grid(row=0, column=1, sticky='w')
self.color = cw
#
# Specify a label width so dialog is not resized for long messages.
#
msg = Tkinter.Label(parent, width=40, anchor='w', justify='left')
msg.grid(row=row, column=0, sticky='ew')
row = row + 1
self.message_label = msg
import SimpleSession
chimera.triggers.addHandler(SimpleSession.SAVE_SESSION,
self.save_session_cb, None)
