def configure(self,
compset_name,
grid_name,
machine_name=None,
project=None,
pecount=None,
compiler=None,
mpilib=None,
user_compset=False,
pesfile=None,
user_grid=False,
gridfile=None,
ninst=1,
test=False,
walltime=None,
queue=None,
output_root=None):
#--------------------------------------------
# compset, pesfile, and compset components
#--------------------------------------------
self._set_compset_and_pesfile(compset_name,
user_compset=user_compset,
pesfile=pesfile)
self._components = self.get_compset_components()
#FIXME - if --user-compset is True then need to determine that
#all of the compset settings are valid
#--------------------------------------------
# grid
#--------------------------------------------
if user_grid is True and gridfile is not None:
self.set_value("GRIDS_SPEC_FILE", gridfile)
grids = Grids(gridfile)
gridinfo = grids.get_grid_info(name=grid_name,
compset=self._compsetname)
self._gridname = gridinfo["GRID"]
for key, value in gridinfo.items():
logger.debug("Set grid %s %s" % (key, value))
self.set_lookup_value(key, value)
#--------------------------------------------
# component config data
#--------------------------------------------
self._get_component_config_data()
self.get_compset_var_settings()
#--------------------------------------------
# machine
#--------------------------------------------
# set machine values in env_xxx files
machobj = Machines(machine=machine_name)
machine_name = machobj.get_machine_name()
self.set_value("MACH", machine_name)
nodenames = machobj.get_node_names()
nodenames = [x for x in nodenames if
'_system' not in x and '_variables' not in x and 'mpirun' not in x and\
'COMPILER' not in x and 'MPILIB' not in x]
for nodename in nodenames:
value = machobj.get_value(nodename, resolved=False)
type_str = self.get_type_info(nodename)
if type_str is not None:
logger.debug("machine nodname %s value %s" % (nodename, value))
self.set_value(nodename,
convert_to_type(value, type_str, nodename))
if compiler is None:
compiler = machobj.get_default_compiler()
else:
expect(
machobj.is_valid_compiler(compiler),
"compiler %s is not supported on machine %s" %
(compiler, machine_name))
self.set_value("COMPILER", compiler)
if mpilib is None:
mpilib = machobj.get_default_MPIlib({"compiler": compiler})
else:
expect(
machobj.is_valid_MPIlib(mpilib, {"compiler": compiler}),
"MPIlib %s is not supported on machine %s" %
(mpilib, machine_name))
self.set_value("MPILIB", mpilib)
machdir = machobj.get_machines_dir()
self.set_value("MACHDIR", machdir)
# Create env_mach_specific settings from machine info.
env_mach_specific_obj = self.get_env("mach_specific")
env_mach_specific_obj.populate(machobj)
self.schedule_rewrite(env_mach_specific_obj)
#--------------------------------------------
# pe payout
#--------------------------------------------
match1 = re.match('([0-9]+)x([0-9]+)',
"" if pecount is None else pecount)
match2 = re.match('([0-9]+)', "" if pecount is None else pecount)
pes_ntasks = {}
pes_nthrds = {}
pes_rootpe = {}
if match1:
opti_tasks = match1.group(1)
opti_thrds = match1.group(2)
elif match2:
opti_tasks = match2.group(1)
opti_thrds = 1
other = {}
if match1 or match2:
for component_class in self._component_classes:
if component_class == "DRV":
component_class = "CPL"
string = "NTASKS_" + component_class
pes_ntasks[string] = opti_tasks
string = "NTHRDS_" + component_class
pes_nthrds[string] = opti_thrds
string = "ROOTPE_" + component_class
pes_rootpe[string] = 0
else:
pesobj = Pes(self._pesfile)
pes_ntasks, pes_nthrds, pes_rootpe, other = pesobj.find_pes_layout(
self._gridname,
self._compsetname,
machine_name,
pesize_opts=pecount)
mach_pes_obj = self.get_env("mach_pes")
totaltasks = {}
# Since other items may include PES_PER_NODE we need to do this first
# we can get rid of this code when all of the perl is removed
for key, value in other.items():
self.set_value(key, value)
pes_per_node = self.get_value("PES_PER_NODE")
for key, value in pes_ntasks.items():
totaltasks[key[-3:]] = int(value)
mach_pes_obj.set_value(key, int(value), pes_per_node=pes_per_node)
for key, value in pes_rootpe.items():
totaltasks[key[-3:]] += int(value)
mach_pes_obj.set_value(key, int(value), pes_per_node=pes_per_node)
for key, value in pes_nthrds.items():
totaltasks[key[-3:]] *= int(value)
mach_pes_obj.set_value(key, int(value), pes_per_node=pes_per_node)
maxval = 1
if mpilib != "mpi-serial":
for key, val in totaltasks.items():
if val < 0:
val = -1 * val * pes_per_node
if val > maxval:
maxval = val
# Make sure that every component has been accounted for
# set, nthrds and ntasks to 1 otherwise. Also set the ninst values here.
for compclass in self._component_classes:
if compclass == "DRV":
continue
key = "NINST_%s" % compclass
mach_pes_obj.set_value(key, ninst)
key = "NTASKS_%s" % compclass
if key not in pes_ntasks.keys():
mach_pes_obj.set_value(key, 1)
key = "NTHRDS_%s" % compclass
if compclass not in pes_nthrds.keys():
mach_pes_obj.set_value(compclass, 1)
# FIXME - this is a short term fix for dealing with the restriction that
# CISM1 cannot run on multiple cores
if "CISM1" in self._compsetname:
mach_pes_obj.set_value("NTASKS_GLC", 1)
mach_pes_obj.set_value("NTHRDS_GLC", 1)
#--------------------------------------------
# batch system
#--------------------------------------------
batch_system_type = machobj.get_value("BATCH_SYSTEM")
batch = Batch(batch_system=batch_system_type, machine=machine_name)
bjobs = batch.get_batch_jobs()
env_batch = self.get_env("batch")
env_batch.set_batch_system(batch, batch_system_type=batch_system_type)
env_batch.create_job_groups(bjobs)
env_batch.set_job_defaults(bjobs,
pesize=maxval,
walltime=walltime,
force_queue=queue)
self.schedule_rewrite(env_batch)
self.set_value("COMPSET", self._compsetname)
self._set_pio_xml()
logger.info(" Compset is: %s " % self._compsetname)
logger.info(" Grid is: %s " % self._gridname)
logger.info(" Components in compset are: %s " % self._components)
# Set project id
if project is None:
project = get_project(machobj)
if project is not None:
self.set_value("PROJECT", project)
elif machobj.get_value("PROJECT_REQUIRED"):
expect(project is not None,
"PROJECT_REQUIRED is true but no project found")
# Resolve the CIME_OUTPUT_ROOT variable, other than this
# we don't want to resolve variables until we need them
if output_root is None:
output_root = self.get_value("CIME_OUTPUT_ROOT")
self.set_value("CIME_OUTPUT_ROOT", output_root)
# Overwriting an existing exeroot or rundir can cause problems
exeroot = self.get_value("EXEROOT")
rundir = self.get_value("RUNDIR")
for wdir in (exeroot, rundir):
logging.debug("wdir is %s" % wdir)
if os.path.exists(wdir):
expect(not test,
"Directory %s already exists, aborting test" % wdir)
response = raw_input(
"\nDirectory %s already exists, (r)eplace, (a)bort, or (u)se existing?"
% wdir)
if response.startswith("r"):
shutil.rmtree(wdir)
else:
expect(response.startswith("u"),
"Aborting by user request")
# miscellaneous settings
if self.get_value("RUN_TYPE") == 'hybrid':
self.set_value("GET_REFCASE", True)
# Turn on short term archiving as cesm default setting
model = get_model()
self.set_model_version(model)
if model == "cesm" and not test:
self.set_value("DOUT_S", True)
self.set_value("TIMER_LEVEL", 4)
if test:
self.set_value("TEST", True)
self.initialize_derived_attributes()
def configure(self, compset_name, grid_name, machine_name=None,
project=None, pecount=None, compiler=None, mpilib=None,
user_compset=False, pesfile=None,
user_grid=False, gridfile=None, ninst=1, test=False,
walltime=None, queue=None):
#--------------------------------------------
# compset, pesfile, and compset components
#--------------------------------------------
self._set_compset_and_pesfile(compset_name, user_compset=user_compset, pesfile=pesfile)
self._components = self.get_compset_components()
#FIXME - if --user-compset is True then need to determine that
#all of the compset settings are valid
#--------------------------------------------
# grid
#--------------------------------------------
if user_grid is True and gridfile is not None:
self.set_value("GRIDS_SPEC_FILE", gridfile)
grids = Grids(gridfile)
gridinfo = grids.get_grid_info(name=grid_name, compset=self._compsetname)
self._gridname = gridinfo["GRID"]
for key,value in gridinfo.items():
logger.debug("Set grid %s %s"%(key,value))
self.set_lookup_value(key,value)
#--------------------------------------------
# component config data
#--------------------------------------------
self._get_component_config_data()
self.get_compset_var_settings()
#--------------------------------------------
# machine
#--------------------------------------------
# set machine values in env_xxx files
machobj = Machines(machine=machine_name)
machine_name = machobj.get_machine_name()
self.set_value("MACH",machine_name)
nodenames = machobj.get_node_names()
nodenames = [x for x in nodenames if
'_system' not in x and '_variables' not in x and 'mpirun' not in x and\
'COMPILER' not in x and 'MPILIB' not in x]
for nodename in nodenames:
value = machobj.get_value(nodename, resolved=False)
type_str = self.get_type_info(nodename)
if type_str is not None:
logger.debug("machine nodname %s value %s"%(nodename, value))
self.set_value(nodename, convert_to_type(value, type_str, nodename))
if compiler is None:
compiler = machobj.get_default_compiler()
else:
expect(machobj.is_valid_compiler(compiler),
"compiler %s is not supported on machine %s" %(compiler, machine_name))
self.set_value("COMPILER",compiler)
if mpilib is None:
mpilib = machobj.get_default_MPIlib({"compiler":compiler})
else:
expect(machobj.is_valid_MPIlib(mpilib, {"compiler":compiler}),
"MPIlib %s is not supported on machine %s" %(mpilib, machine_name))
self.set_value("MPILIB",mpilib)
machdir = machobj.get_machines_dir()
self.set_value("MACHDIR", machdir)
# Create env_mach_specific settings from machine info.
env_mach_specific_obj = self.get_env("mach_specific")
env_mach_specific_obj.populate(machobj)
self.schedule_rewrite(env_mach_specific_obj)
#--------------------------------------------
# pe payout
#--------------------------------------------
match1 = re.match('([0-9]+)x([0-9]+)', "" if pecount is None else pecount)
match2 = re.match('([0-9]+)', "" if pecount is None else pecount)
pes_ntasks = {}
pes_nthrds = {}
pes_rootpe = {}
if match1:
opti_tasks = match1.group(1)
opti_thrds = match1.group(2)
elif match2:
opti_tasks = match2.group(1)
opti_thrds = 1
other = {}
if match1 or match2:
for component_class in self._component_classes:
if component_class == "DRV":
component_class = "CPL"
string = "NTASKS_" + component_class
pes_ntasks[string] = opti_tasks
string = "NTHRDS_" + component_class
pes_nthrds[string] = opti_thrds
string = "ROOTPE_" + component_class
pes_rootpe[string] = 0
else:
pesobj = Pes(self._pesfile)
pes_ntasks, pes_nthrds, pes_rootpe, other = pesobj.find_pes_layout(self._gridname, self._compsetname,
machine_name, pesize_opts=pecount)
mach_pes_obj = self.get_env("mach_pes")
totaltasks = {}
# Since other items may include PES_PER_NODE we need to do this first
# we can get rid of this code when all of the perl is removed
for key, value in other.items():
self.set_value(key, value)
pes_per_node = self.get_value("PES_PER_NODE")
for key, value in pes_ntasks.items():
totaltasks[key[-3:]] = int(value)
mach_pes_obj.set_value(key,int(value), pes_per_node=pes_per_node)
for key, value in pes_rootpe.items():
totaltasks[key[-3:]] += int(value)
mach_pes_obj.set_value(key,int(value), pes_per_node=pes_per_node)
for key, value in pes_nthrds.items():
totaltasks[key[-3:]] *= int(value)
mach_pes_obj.set_value(key,int(value), pes_per_node=pes_per_node)
maxval = 1
if mpilib != "mpi-serial":
for key, val in totaltasks.items():
if val < 0:
val = -1*val*pes_per_node
if val > maxval:
maxval = val
# Make sure that every component has been accounted for
# set, nthrds and ntasks to 1 otherwise. Also set the ninst values here.
for compclass in self._component_classes:
if compclass == "DRV":
continue
key = "NINST_%s"%compclass
mach_pes_obj.set_value(key, ninst)
key = "NTASKS_%s"%compclass
if key not in pes_ntasks.keys():
mach_pes_obj.set_value(key,1)
key = "NTHRDS_%s"%compclass
if compclass not in pes_nthrds.keys():
mach_pes_obj.set_value(compclass,1)
# FIXME - this is a short term fix for dealing with the restriction that
# CISM1 cannot run on multiple cores
if "CISM1" in self._compsetname:
mach_pes_obj.set_value("NTASKS_GLC",1)
mach_pes_obj.set_value("NTHRDS_GLC",1)
#--------------------------------------------
# batch system
#--------------------------------------------
batch_system_type = machobj.get_value("BATCH_SYSTEM")
batch = Batch(batch_system=batch_system_type, machine=machine_name)
bjobs = batch.get_batch_jobs()
env_batch = self.get_env("batch")
env_batch.set_batch_system(batch, batch_system_type=batch_system_type)
env_batch.create_job_groups(bjobs)
env_batch.set_job_defaults(bjobs, pesize=maxval, walltime=walltime, force_queue=queue)
self.schedule_rewrite(env_batch)
self.set_value("COMPSET",self._compsetname)
self._set_pio_xml()
logger.info(" Compset is: %s " %self._compsetname)
logger.info(" Grid is: %s " %self._gridname )
logger.info(" Components in compset are: %s " %self._components)
# Set project id
if project is None:
project = get_project(machobj)
if project is not None:
self.set_value("PROJECT", project)
elif machobj.get_value("PROJECT_REQUIRED"):
expect(project is not None, "PROJECT_REQUIRED is true but no project found")
# Overwriting an existing exeroot or rundir can cause problems
exeroot = self.get_value("EXEROOT")
rundir = self.get_value("RUNDIR")
for wdir in (exeroot, rundir):
logging.debug("wdir is %s"%wdir)
if os.path.exists(wdir):
expect(not test, "Directory %s already exists, aborting test"% wdir)
response = raw_input("\nDirectory %s already exists, (r)eplace, (a)bort, or (u)se existing?"% wdir)
if response.startswith("r"):
shutil.rmtree(wdir)
else:
expect(response.startswith("u"), "Aborting by user request")
# miscellaneous settings
if self.get_value("RUN_TYPE") == 'hybrid':
self.set_value("GET_REFCASE", True)
# Turn on short term archiving as cesm default setting
model = get_model()
if model == "cesm" and not test:
self.set_value("DOUT_S",True)
def configure(self, compset_name, grid_name, machine_name=None,
project=None, pecount=None, compiler=None, mpilib=None,
user_compset=False, pesfile=None,
user_grid=False, gridfile=None, ninst=1, test=False):
#--------------------------------------------
# compset, pesfile, and compset components
#--------------------------------------------
self._set_compset_and_pesfile(compset_name, user_compset=user_compset, pesfile=pesfile)
self._components = self.get_compset_components()
#FIXME - if --user-compset is True then need to determine that
#all of the compset settings are valid
#--------------------------------------------
# grid
#--------------------------------------------
if user_grid is True and gridfile is not None:
self.set_value("GRIDS_SPEC_FILE", gridfile);
grids = Grids(gridfile)
gridinfo = grids.get_grid_info(name=grid_name, compset=self._compsetname)
self._gridname = gridinfo["GRID"]
for key,value in gridinfo.items():
logger.debug("Set grid %s %s"%(key,value))
self.set_value(key,value)
#--------------------------------------------
# component config data
#--------------------------------------------
self._get_component_config_data()
self.get_compset_var_settings()
# Add the group and elements for the config_files.xml
for idx, config_file in enumerate(self._component_config_files):
self.set_value(config_file[0],config_file[1])
#--------------------------------------------
# machine
#--------------------------------------------
# set machine values in env_xxx files
machobj = Machines(machine=machine_name)
machine_name = machobj.get_machine_name()
self.set_value("MACH",machine_name)
nodenames = machobj.get_node_names()
nodenames = [x for x in nodenames if
'_system' not in x and '_variables' not in x and 'mpirun' not in x and\
'COMPILER' not in x and 'MPILIB' not in x]
for nodename in nodenames:
value = machobj.get_value(nodename)
type_str = self.get_type_info(nodename)
if type_str is not None:
self.set_value(nodename, convert_to_type(value, type_str, nodename))
if compiler is None:
compiler = machobj.get_default_compiler()
else:
expect(machobj.is_valid_compiler(compiler),
"compiler %s is not supported on machine %s" %(compiler, machine_name))
self.set_value("COMPILER",compiler)
if mpilib is None:
mpilib = machobj.get_default_MPIlib({"compiler":compiler})
else:
expect(machobj.is_valid_MPIlib(mpilib, {"compiler":compiler}),
"MPIlib %s is not supported on machine %s" %(mpilib, machine_name))
self.set_value("MPILIB",mpilib)
machdir = machobj.get_machines_dir()
self.set_value("MACHDIR", machdir)
# Overwriting an existing exeroot or rundir can cause problems
exeroot = self.get_value("EXEROOT")
rundir = self.get_value("RUNDIR")
for wdir in (exeroot, rundir):
if os.path.exists(wdir):
expect(not test, "Directory %s already exists, aborting test"% wdir)
response = raw_input("\nDirectory %s already exists, (r)eplace, (a)bort, or (u)se existing?"% wdir)
if response.startswith("r"):
shutil.rmtree(wdir)
else:
expect(response.startswith("u"), "Aborting by user request")
# the following go into the env_mach_specific file
vars = ("module_system", "environment_variables", "mpirun")
env_mach_specific_obj = self._get_env("mach_specific")
for var in vars:
nodes = machobj.get_first_child_nodes(var)
for node in nodes:
env_mach_specific_obj.add_child(node)
#--------------------------------------------
# pe payout
#--------------------------------------------
pesobj = Pes(self._pesfile)
#FIXME - add pesize_opts as optional argument below
pes_ntasks, pes_nthrds, pes_rootpe = pesobj.find_pes_layout(self._gridname, self._compsetname,
machine_name, pesize_opts=pecount)
mach_pes_obj = self._get_env("mach_pes")
totaltasks = {}
for key, value in pes_ntasks.items():
totaltasks[key[-3:]] = int(value)
mach_pes_obj.set_value(key,int(value))
for key, value in pes_rootpe.items():
totaltasks[key[-3:]] += int(value)
mach_pes_obj.set_value(key,int(value))
for key, value in pes_nthrds.items():
totaltasks[key[-3:]] *= int(value)
mach_pes_obj.set_value(key,int(value))
maxval = 1
pes_per_node = mach_pes_obj.get_value("PES_PER_NODE")
for key, val in totaltasks.items():
if val < 0:
val = -1*val*pes_per_node
if val > maxval:
maxval = val
# Make sure that every component has been accounted for
# set, nthrds and ntasks to 1 otherwise. Also set the ninst values here.
for compclass in self._component_classes:
if compclass == "DRV":
continue
key = "NINST_%s"%compclass
mach_pes_obj.set_value(key, ninst)
key = "NTASKS_%s"%compclass
if key not in pes_ntasks.keys():
mach_pes_obj.set_value(key,1)
key = "NTHRDS_%s"%compclass
if compclass not in pes_nthrds.keys():
mach_pes_obj.set_value(compclass,1)
# FIXME - this is a short term fix for dealing with the restriction that
# CISM1 cannot run on multiple cores
if "CISM1" in self._compsetname:
mach_pes_obj.set_value("NTASKS_GLC",1)
mach_pes_obj.set_value("NTHRDS_GLC",1)
#--------------------------------------------
# batch system
#--------------------------------------------
batch_system_type = machobj.get_value("BATCH_SYSTEM")
batch = Batch(batch_system=batch_system_type, machine=machine_name)
bjobs = batch.get_batch_jobs()
env_batch = self._get_env("batch")
env_batch.set_batch_system(batch, batch_system_type=batch_system_type)
env_batch.create_job_groups(bjobs)
env_batch.set_job_defaults(bjobs, pesize=maxval)
self._env_files_that_need_rewrite.add(env_batch)
self.set_value("COMPSET",self._compsetname)
self._set_pio_xml()
logger.info(" Compset is: %s " %self._compsetname)
logger.info(" Grid is: %s " %self._gridname )
logger.info(" Components in compset are: %s " %self._components)
# miscellaneous settings
if self.get_value("RUN_TYPE") == 'hybrid':
self.set_value("GET_REFCASE", True)
# Set project id
if project is None:
project = get_project(machobj)
if project is not None:
self.set_value("PROJECT", project)
elif machobj.get_value("PROJECT_REQUIRED"):
expect(project is not None, "PROJECT_REQUIRED is true but no project found")
