def test_plurality2():
config = PluralityConfig(minConfidence=0, minCoverage=0)
css, variants = pluralityConsensusAndVariants(
StaggeredReads.referenceWindow, StaggeredReads.reference,
StaggeredReads.hits, config)
assert_equal(StaggeredReads.expectedPluralityConsensus, css.sequence)
assert_equal(StaggeredReads.expectedPluralityVariants, variants)
def test_plurality1():
css, variants = pluralityConsensusAndVariants(
ForwardAndReverseReads.referenceWindow,
ForwardAndReverseReads.reference, ForwardAndReverseReads.hits,
PluralityConfig())
assert_equal(ForwardAndReverseReads.expectedPluralityConsensus,
css.sequence)
assert_equal(ForwardAndReverseReads.expectedPluralityVariants, variants)
def test_plurality1():
css, variants = pluralityConsensusAndVariants(ForwardAndReverseReads.referenceWindow,
ForwardAndReverseReads.reference,
ForwardAndReverseReads.hits,
PluralityConfig())
assert_equal(ForwardAndReverseReads.expectedPluralityConsensus,
css.sequence)
assert_equal(ForwardAndReverseReads.expectedPluralityVariants,
variants)
def test_plurality2():
config = PluralityConfig(minConfidence=0, minCoverage=0)
css, variants = pluralityConsensusAndVariants(StaggeredReads.referenceWindow,
StaggeredReads.reference,
StaggeredReads.hits,
config)
assert_equal(StaggeredReads.expectedPluralityConsensus,
css.sequence)
assert_equal(StaggeredReads.expectedPluralityVariants,
variants)