def test_loadJunctionReadName(): from LoadCandidates import test_loadFusionCandidates candidateDic = test_loadFusionCandidates() junctionReadNamePath = '../testdata/star-fusion.junction_read_names' return loadJunctionReadName(junctionReadNamePath, candidateDic)
def test_loadSpanningReadName(): from LoadCandidates import test_loadFusionCandidates candidateDic = test_loadFusionCandidates() spanningReadNamePath = '../testdata/star-fusion.spanning_read_names' return loadSpanningReadName(spanningReadNamePath, candidateDic)
def test_output(): from LoadCandidates import test_loadFusionCandidates candidateDic = test_loadFusionCandidates() from DedupReads import test_dedup1, test_dedup2 junctionDedupReadDic = test_dedup1() spanningDedupReadDic = test_dedup2() samPath = '../testdata/Chimeric.out.sam.gz' prefix = '../testdata/testresult' output(candidateDic, junctionDedupReadDic, spanningDedupReadDic, samPath, prefix)