Python test_loadFusionCandidates示例

示例#1

文件： LoadJunctionReadName.py 项目： readline/StarAlignerFusionUtil

def test_loadJunctionReadName():
    from LoadCandidates import test_loadFusionCandidates
    candidateDic = test_loadFusionCandidates()

    junctionReadNamePath = '../testdata/star-fusion.junction_read_names'

    return loadJunctionReadName(junctionReadNamePath, candidateDic)

示例#2

def test_loadSpanningReadName():
    from LoadCandidates import test_loadFusionCandidates
    candidateDic = test_loadFusionCandidates()

    spanningReadNamePath = '../testdata/star-fusion.spanning_read_names'

    return loadSpanningReadName(spanningReadNamePath, candidateDic)

示例#3

文件： LoadJunctionReadName.py 项目： readline/StarAlignerFusionUtil

def test_loadJunctionReadName():
    from LoadCandidates import test_loadFusionCandidates
    candidateDic = test_loadFusionCandidates()

    junctionReadNamePath = '../testdata/star-fusion.junction_read_names'

    return loadJunctionReadName(junctionReadNamePath, candidateDic)

示例#4

文件： OutputModifiedCandidates.py 项目： readline/StarAlignerFusionUtil

def test_output():
    from LoadCandidates import test_loadFusionCandidates
    candidateDic = test_loadFusionCandidates()

    from DedupReads import test_dedup1, test_dedup2
    junctionDedupReadDic = test_dedup1()
    spanningDedupReadDic = test_dedup2()

    samPath = '../testdata/Chimeric.out.sam.gz'

    prefix  = '../testdata/testresult'

    output(candidateDic, junctionDedupReadDic, spanningDedupReadDic, samPath, prefix)

示例#5

文件： OutputModifiedCandidates.py 项目： readline/StarAlignerFusionUtil

def test_output():
    from LoadCandidates import test_loadFusionCandidates
    candidateDic = test_loadFusionCandidates()

    from DedupReads import test_dedup1, test_dedup2
    junctionDedupReadDic = test_dedup1()
    spanningDedupReadDic = test_dedup2()

    samPath = '../testdata/Chimeric.out.sam.gz'

    prefix = '../testdata/testresult'

    output(candidateDic, junctionDedupReadDic, spanningDedupReadDic, samPath,
           prefix)