def next(self): """ Return next read collection from the compact reads file """ buf = MessageChunksReader.next(self) collection = Reads_pb2.ReadCollection() collection.ParseFromString(buf) return collection
def __init__(self, filename, verbose = False): MessageChunksReader.__init__(self, filename, verbose)
def __init__(self, filename, verbose=False): MessageChunksReader.__init__(self, filename, verbose)
def next(self): """ Return next alignment collection from the entries file.""" buf = MessageChunksReader.next(self) collection = Alignments_pb2.AlignmentCollection() collection.ParseFromString(buf) return collection
def __init__(self, basename, verbose = False): MessageChunksReader.__init__(self, get_basename(basename) + ".entries", verbose)