def next(self):
""" Return next read collection from the
compact reads file
"""
buf = MessageChunksReader.next(self)
collection = Reads_pb2.ReadCollection()
collection.ParseFromString(buf)
return collection
def next(self):
""" Return next read collection from the
compact reads file
"""
buf = MessageChunksReader.next(self)
collection = Reads_pb2.ReadCollection()
collection.ParseFromString(buf)
return collection
def __init__(self, filename, verbose = False):
MessageChunksReader.__init__(self, filename, verbose)
def __init__(self, filename, verbose=False):
MessageChunksReader.__init__(self, filename, verbose)
def next(self):
""" Return next alignment collection from the entries file."""
buf = MessageChunksReader.next(self)
collection = Alignments_pb2.AlignmentCollection()
collection.ParseFromString(buf)
return collection
def __init__(self, basename, verbose = False):
MessageChunksReader.__init__(self, get_basename(basename) + ".entries", verbose)