Python Alignment.loadStockholmの例

コード例 #1

ファイル: stockholm2phylip.py プロジェクト: SiriusShiu/Mungo

#!/usr/bin/env python

"""
stockholm2phylip.py <stockholm filename> <phylip filename>

Author: Tony Papenfuss
Date: Sun May  6 13:34 EST 2007

"""

import os, sys
from align import Alignment


iFilename = sys.argv[1]
oFilename = sys.argv[2]

alignment = Alignment.loadStockholm(iFilename)
for name in alignment:
    alignment[name] = alignment[name].replace('.', '-')
alignment.savePhylip(oFilename)

コード例 #2

ファイル: stockholm2phylip.py プロジェクト: PapenfussLab/Mungo

#!/usr/bin/env python
"""
stockholm2phylip.py <stockholm filename> <phylip filename>

Author: Tony Papenfuss
Date: Sun May  6 13:34 EST 2007

"""

import os, sys
from align import Alignment

iFilename = sys.argv[1]
oFilename = sys.argv[2]

alignment = Alignment.loadStockholm(iFilename)
for name in alignment:
    alignment[name] = alignment[name].replace('.', '-')
alignment.savePhylip(oFilename)