#!/usr/bin/env python
"""
stockholm2phylip.py <stockholm filename> <phylip filename>
Author: Tony Papenfuss
Date: Sun May 6 13:34 EST 2007
"""
import os, sys
from align import Alignment
iFilename = sys.argv[1]
oFilename = sys.argv[2]
alignment = Alignment.loadStockholm(iFilename)
for name in alignment:
alignment[name] = alignment[name].replace('.', '-')
alignment.savePhylip(oFilename)
#!/usr/bin/env python
"""
stockholm2phylip.py <stockholm filename> <phylip filename>
Author: Tony Papenfuss
Date: Sun May 6 13:34 EST 2007
"""
import os, sys
from align import Alignment
iFilename = sys.argv[1]
oFilename = sys.argv[2]
alignment = Alignment.loadStockholm(iFilename)
for name in alignment:
alignment[name] = alignment[name].replace('.', '-')
alignment.savePhylip(oFilename)
