Python to_rec_singleの例

コード例 #1

def alignment_to_rec(*args):
    default_keys = [
        "config__algorithm__align_split_size", "config__algorithm__aligner",
        "config__algorithm__mark_duplicates", "reference__bwa__indexes",
        "reference__snap__indexes", "reference__bowtie2__indexes",
        "reference__novoalign__indexes", "rgnames__pl", "rgnames__sample",
        "rgnames__pu", "rgnames__lane", "rgnames__rg", "rgnames__lb"
    ]
    return cwlutils.to_rec_single(*args, default_keys=default_keys)

コード例 #2

ファイル: multitasks.py プロジェクト: biocyberman/bcbio-nextgen

def alignment_to_rec(*args):
    default_keys = ["config__algorithm__align_split_size",
                    "config__algorithm__aligner",
                    "config__algorithm__mark_duplicates",
                    "reference__bwa__indexes",
                    "reference__snap__indexes",
                    "reference__bowtie2__indexes",
                    "reference__novoalign__indexes",
                    "rgnames__pl", "rgnames__sample", "rgnames__pu",
                    "rgnames__lane", "rgnames__rg", "rgnames__lb"]
    return cwlutils.to_rec_single(*args, default_keys=default_keys)