def is_boxplot(name, f):
"""Return True if f is a qc_boxplot associated with sample
'name' can be a file name, or a file 'root' i.e. filename
with all trailing extensions removed.
"""
name_underscore = os.path.basename(strip_ngs_extensions(name)) + "_"
name_dot = os.path.basename(utils.rootname(name)) + "."
if f.endswith("_boxplot.png"):
if f.startswith(name_dot) or f.startswith(name_underscore):
return True
# Try progressive manipulations looking for a match
#
# Removing "_QV" from names
f1 = f.replace("_QV", "")
if f1.startswith(name_underscore) or f1.startswith(name_dot):
return True
# Removing "_F3_" from names
f1 = f1.replace("_F3_", "_")
if f1.startswith(name_underscore) or f1.startswith(name_dot):
return True
# Removing "_F5-BC_" from names
f1 = f1.replace("_F5-BC_", "_")
if f1.startswith(name_underscore) or f1.startswith(name_dot):
return True
# Failed all tests, not a boxplot
return False
def is_program_info(name, f):
"""Return True if f is a 'program info' file associated with name
'name' can be a file name, or a file 'root' i.e. filename
with all trailing extensions removed.
"""
name_underscore = os.path.basename(strip_ngs_extensions(name)) + "_"
name_dot = os.path.basename(utils.rootname(name)) + "."
if f.endswith(".programs") and (f.startswith(name_dot) or f.startswith(name_underscore)):
return True
else:
return False
