Example #1
0
def is_boxplot(name, f):
    """Return True if f is a qc_boxplot associated with sample

    'name' can be a file name, or a file 'root' i.e. filename
    with all trailing extensions removed.

    """
    name_underscore = os.path.basename(strip_ngs_extensions(name)) + "_"
    name_dot = os.path.basename(utils.rootname(name)) + "."
    if f.endswith("_boxplot.png"):
        if f.startswith(name_dot) or f.startswith(name_underscore):
            return True
        # Try progressive manipulations looking for a match
        #
        # Removing "_QV" from names
        f1 = f.replace("_QV", "")
        if f1.startswith(name_underscore) or f1.startswith(name_dot):
            return True
        # Removing "_F3_" from names
        f1 = f1.replace("_F3_", "_")
        if f1.startswith(name_underscore) or f1.startswith(name_dot):
            return True
        # Removing "_F5-BC_" from names
        f1 = f1.replace("_F5-BC_", "_")
        if f1.startswith(name_underscore) or f1.startswith(name_dot):
            return True
    # Failed all tests, not a boxplot
    return False
Example #2
0
def is_program_info(name, f):
    """Return True if f is a 'program info' file associated with name

    'name' can be a file name, or a file 'root' i.e. filename
    with all trailing extensions removed.

    """
    name_underscore = os.path.basename(strip_ngs_extensions(name)) + "_"
    name_dot = os.path.basename(utils.rootname(name)) + "."
    if f.endswith(".programs") and (f.startswith(name_dot) or f.startswith(name_underscore)):
        return True
    else:
        return False