cycle_list[cycle_number] = cycle_list[cycle_number].strip()
logger.info("---\t-\t--> Cycle_list key: %s" % \
cycle_list[cycle_number])
logger.info("---\t-\t--> Cycle number: %i" % cycle_number)
cycle_list2 = cycle_list
# if(cycle_list[cycle_number] == 'abc'):
if(1):
time.sleep(0.1)
else:
# print cycle_list[cycle_number]
biochem = Biochem(cycle_list[cycle_number], flowcell, logger)
biochem.start()
while(biochem.isAlive()):
session.parse_read_string('y.ob[2]=1', '>')
session.parse_read_string('y.ob[2]=0', '>')
time.sleep(1)
if(cycle_list[cycle_number] == 'abc'):
time.sleep(0.1)
else:
# print cycle_list[cycle_number]
imager = PolonatorImager.Imager(cycle_list[cycle_number], \
flowcell)
imager.start()
while(imager.isAlive()):
session.parse_read_string('y.ob[1]=1', '>')
if (installed_flowcells == 1):
for cycle_number in range(0, cycle_list_length):
cycle_list[cycle_number] = cycle_list[cycle_number].strip()
logger.info("---\t-\t--> Cycle_list key: %s" %
cycle_list[cycle_number])
logger.info("---\t-\t--> Cycle number: %i" % cycle_number)
cycle_list2 = cycle_list
if (cycle_list[cycle_number] == 'AM1g'):
time.sleep(0.1)
else:
biochem = Biochem(cycle_list[cycle_number], flowcell,
logger)
biochem.start()
while (biochem.isAlive()):
session.parse_read_string('y.ob[2]=1', '>')
session.parse_read_string('y.ob[2]=0', '>')
time.sleep(0.1)
# if(cycle_list[cycle_number] == 'WL1'):
# time.sleep(0.1)
# else:
# imager = PolonatorImager.Imager(cycle_list[cycle_number], flowcell)
# imager.start()
#
# while(imager.isAlive()):
# session.parse_read_string('y.ob[1]=1', '>')
# session.parse_read_string('y.ob[1]=0', '>')
# time.sleep(0.1)
