def test_sequences2(): fasta = FastaFile("/home/kenglish/Data/uploads/EST_Clade_A.fasta") sequences = fasta.get_sequences() nose.tools.assert_equal( len(sequences ), 2163 ) nose.tools.assert_equal( sequences[0].id, "1420338:1") nose.tools.assert_equal( len(sequences[0]) , 302 )
def test_sequence_count(): file = fastafile.PERMANENT_STORE + "EST_Clade_A_5.fasta" fasta = FastaFile( file ) nose.tools.assert_equal(fasta.sequence_count(), 5)