def find_bird4(sppsci, spplist): #pass scientific name, list of requested 4-letter codes - cycle through spplist and return matching 4-letter bird code result = '' for n, b in enumerate(spplist): #loop through passed bird4 list if sppsci == bird_codes.lookup_bird(b)['SCINAME']: #check if sciname matches passed value result = b return result
def find_bird4(sppsci, spplist): #pass scientific name, list of requested 4-letter codes - cycle through spplist and return matching 4-letter bird code result = '' for n, b in enumerate(spplist): #loop through passed bird4 list if sppsci == bird_codes.lookup_bird( b)['SCINAME']: #check if sciname matches passed value result = b return result
def load_cmd_args(): print nl + '-looping through command line arguments' ############################ #TEMPORARY - use to simulate command line arguments ######INPUT DATA HERE############################# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=RUBL st=NC' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=LOSH st=NC' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=NOBO st=NC,SC,VA,GA,TN' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=KEWA,SWWA,CERW,WOTH,YBCU st=NC' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003-2015 spp=BACS,YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2010-2015 spp=RUBL' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA st=NC' temp_argv = temp_argv.split(' ') global bstall global byrsall global bsppall global rootdir global fn # try: for argn, arg in enumerate(temp_argv): #for testing # for argn, arg in enumerate(sys.argv): if argn >= 1: #parse values if "=" in arg: #format should be: argname=[val1,val2,val3] flag = arg.split('=') params[flag[0]] = flag[1].split(',') else: #assume it is a filename fn = arg elif argn == 0: dirfilesep = arg.rfind('\\') + 1 rootdir = arg[:dirfilesep] sourcefile = arg[dirfilesep:] if len(fn) == 0: #no filename passed, use default fn = 'E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt' ################################# #populate scientific names in parameters print nl + '-populating species' if len(params['spp']) == 0: params['sppsci'].append('all') bsppall = True else: for i in params['spp']: params['sppsci'].append(bird_codes.lookup_bird(i)['SCINAME']) print str(params['sppsci']) ################################# #populate all years in parameters print nl + '-populating years' yr_in = params['yrs'] if len(params['yrs']) == 0: params['yrsall'].append('all') byrsall = True elif '-' in yr_in[0]: #should represent a range of years print 'range detected' yr_range = yr_in[0].split('-') for y in range(int(yr_range[0]), int(yr_range[1]) + 1): params['yrsall'].append(y) else: #one year or comma separated list for y in yr_in: params['yrsall'].append(y) print str(params['yrsall']) ################################# #populate all states in parameters print nl + '-populating states' if len(params['st']) == 0: params['stall'].append('all') bstall = True else: for i in params['st']: if i in us_state_abbr: params['stall'].append(us_states[i][0]) else: params['stall'].append(i) print str(params['stall']) ################################# #check to see if minimum parameters present if bstall and byrsall and bsppall: print '----------------------------------' + nl + 'You must specify at least one criteria to produce results.' + nl + '----------------------------------' error_text()
def load_cmd_args(): print nl+'-looping through command line arguments' ############################ #TEMPORARY - use to simulate command line arguments ######INPUT DATA HERE############################# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=RUBL st=NC' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=LOSH st=NC' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=NOBO st=NC,SC,VA,GA,TN' # temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=KEWA,SWWA,CERW,WOTH,YBCU st=NC' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003-2015 spp=BACS,YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2010-2015 spp=RUBL' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA' # temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA st=NC' temp_argv = temp_argv.split(' ') global bstall global byrsall global bsppall global rootdir global fn # try: for argn, arg in enumerate(temp_argv): #for testing # for argn, arg in enumerate(sys.argv): if argn>=1: #parse values if "=" in arg: #format should be: argname=[val1,val2,val3] flag = arg.split('=') params[flag[0]]= flag[1].split(',') else: #assume it is a filename fn = arg elif argn==0: dirfilesep = arg.rfind('\\')+1 rootdir = arg[:dirfilesep] sourcefile = arg[dirfilesep:] if len(fn)==0: #no filename passed, use default fn = 'E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt' ################################# #populate scientific names in parameters print nl + '-populating species' if len(params['spp'])==0: params['sppsci'].append('all') bsppall = True else: for i in params['spp']: params['sppsci'].append(bird_codes.lookup_bird(i)['SCINAME']) print str(params['sppsci']) ################################# #populate all years in parameters print nl + '-populating years' yr_in = params['yrs'] if len(params['yrs'])==0: params['yrsall'].append('all') byrsall = True elif '-' in yr_in[0]: #should represent a range of years print 'range detected' yr_range = yr_in[0].split('-') for y in range(int(yr_range[0]),int(yr_range[1])+1): params['yrsall'].append(y) else: #one year or comma separated list for y in yr_in: params['yrsall'].append(y) print str(params['yrsall']) ################################# #populate all states in parameters print nl + '-populating states' if len(params['st'])==0: params['stall'].append('all') bstall = True else: for i in params['st']: if i in us_state_abbr: params['stall'].append(us_states[i][0]) else: params['stall'].append(i) print str(params['stall']) ################################# #check to see if minimum parameters present if bstall and byrsall and bsppall: print '----------------------------------'+nl+'You must specify at least one criteria to produce results.'+nl+'----------------------------------' error_text()