def find_bird4(sppsci, spplist): #pass scientific name, list of requested 4-letter codes - cycle through spplist and return matching 4-letter bird code result = '' for n, b in enumerate(spplist): #loop through passed bird4 list if sppsci == bird_codes.lookup_bird(b)['SCINAME']: #check if sciname matches passed value result = b return result
def find_bird4(sppsci, spplist):
#pass scientific name, list of requested 4-letter codes - cycle through spplist and return matching 4-letter bird code
result = ''
for n, b in enumerate(spplist): #loop through passed bird4 list
if sppsci == bird_codes.lookup_bird(
b)['SCINAME']: #check if sciname matches passed value
result = b
return result
def load_cmd_args():
print nl + '-looping through command line arguments'
############################
#TEMPORARY - use to simulate command line arguments
######INPUT DATA HERE#############################
temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=RUBL st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=LOSH st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=NOBO st=NC,SC,VA,GA,TN'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=KEWA,SWWA,CERW,WOTH,YBCU st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003-2015 spp=BACS,YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2010-2015 spp=RUBL'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA st=NC'
temp_argv = temp_argv.split(' ')
global bstall
global byrsall
global bsppall
global rootdir
global fn
# try:
for argn, arg in enumerate(temp_argv): #for testing
# for argn, arg in enumerate(sys.argv):
if argn >= 1: #parse values
if "=" in arg:
#format should be: argname=[val1,val2,val3]
flag = arg.split('=')
params[flag[0]] = flag[1].split(',')
else: #assume it is a filename
fn = arg
elif argn == 0:
dirfilesep = arg.rfind('\\') + 1
rootdir = arg[:dirfilesep]
sourcefile = arg[dirfilesep:]
if len(fn) == 0: #no filename passed, use default
fn = 'E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt'
#################################
#populate scientific names in parameters
print nl + '-populating species'
if len(params['spp']) == 0:
params['sppsci'].append('all')
bsppall = True
else:
for i in params['spp']:
params['sppsci'].append(bird_codes.lookup_bird(i)['SCINAME'])
print str(params['sppsci'])
#################################
#populate all years in parameters
print nl + '-populating years'
yr_in = params['yrs']
if len(params['yrs']) == 0:
params['yrsall'].append('all')
byrsall = True
elif '-' in yr_in[0]: #should represent a range of years
print 'range detected'
yr_range = yr_in[0].split('-')
for y in range(int(yr_range[0]), int(yr_range[1]) + 1):
params['yrsall'].append(y)
else: #one year or comma separated list
for y in yr_in:
params['yrsall'].append(y)
print str(params['yrsall'])
#################################
#populate all states in parameters
print nl + '-populating states'
if len(params['st']) == 0:
params['stall'].append('all')
bstall = True
else:
for i in params['st']:
if i in us_state_abbr:
params['stall'].append(us_states[i][0])
else:
params['stall'].append(i)
print str(params['stall'])
#################################
#check to see if minimum parameters present
if bstall and byrsall and bsppall:
print '----------------------------------' + nl + 'You must specify at least one criteria to produce results.' + nl + '----------------------------------'
error_text()
def load_cmd_args():
print nl+'-looping through command line arguments'
############################
#TEMPORARY - use to simulate command line arguments
######INPUT DATA HERE#############################
temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=RUBL st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py J:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=LOSH st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=NOBO st=NC,SC,VA,GA,TN'
# temp_argv = 'C:\\data\\@projects\\eBird_obs\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=KEWA,SWWA,CERW,WOTH,YBCU st=NC'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt spp=YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003-2015 spp=BACS,YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2010-2015 spp=RUBL'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA'
# temp_argv = 'C:\\data\\@projects\\eBird\\20150825_parse_ebird_records.py E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt yrs=2003,2004 spp=BACS,YCPA st=NC'
temp_argv = temp_argv.split(' ')
global bstall
global byrsall
global bsppall
global rootdir
global fn
# try:
for argn, arg in enumerate(temp_argv): #for testing
# for argn, arg in enumerate(sys.argv):
if argn>=1: #parse values
if "=" in arg:
#format should be: argname=[val1,val2,val3]
flag = arg.split('=')
params[flag[0]]= flag[1].split(',')
else: #assume it is a filename
fn = arg
elif argn==0:
dirfilesep = arg.rfind('\\')+1
rootdir = arg[:dirfilesep]
sourcefile = arg[dirfilesep:]
if len(fn)==0: #no filename passed, use default
fn = 'E:\\ebird_data\\ebd_relMay-2015\\ebd_relMay-2015.txt'
#################################
#populate scientific names in parameters
print nl + '-populating species'
if len(params['spp'])==0:
params['sppsci'].append('all')
bsppall = True
else:
for i in params['spp']:
params['sppsci'].append(bird_codes.lookup_bird(i)['SCINAME'])
print str(params['sppsci'])
#################################
#populate all years in parameters
print nl + '-populating years'
yr_in = params['yrs']
if len(params['yrs'])==0:
params['yrsall'].append('all')
byrsall = True
elif '-' in yr_in[0]: #should represent a range of years
print 'range detected'
yr_range = yr_in[0].split('-')
for y in range(int(yr_range[0]),int(yr_range[1])+1):
params['yrsall'].append(y)
else: #one year or comma separated list
for y in yr_in:
params['yrsall'].append(y)
print str(params['yrsall'])
#################################
#populate all states in parameters
print nl + '-populating states'
if len(params['st'])==0:
params['stall'].append('all')
bstall = True
else:
for i in params['st']:
if i in us_state_abbr:
params['stall'].append(us_states[i][0])
else:
params['stall'].append(i)
print str(params['stall'])
#################################
#check to see if minimum parameters present
if bstall and byrsall and bsppall:
print '----------------------------------'+nl+'You must specify at least one criteria to produce results.'+nl+'----------------------------------'
error_text()
