def test_antitarget(self): """The 'antitarget' command.""" baits = tabio.read_auto('formats/nv2_baits.interval_list') access = tabio.read_auto('../data/access-5k-mappable.hg19.bed') self.assertLess(0, len(commands.do_antitarget(baits))) self.assertLess(0, len(commands.do_antitarget(baits, access))) self.assertLess(0, len(commands.do_antitarget(baits, access, 200000))) self.assertLess(0, len(commands.do_antitarget(baits, access, 10000, 5000)))
def test_antitarget(self): baits_fname = "formats/nv2_baits.interval_list" access_fname = "../data/access-5k-mappable.hg19.bed" self.assertTrue(0 < len(list( commands.do_antitarget(baits_fname)))) self.assertTrue(0 < len(list( commands.do_antitarget(baits_fname, access_fname)))) self.assertTrue(0 < len(list( commands.do_antitarget(baits_fname, access_fname, 200000)))) self.assertTrue(0 < len(list( commands.do_antitarget(baits_fname, access_fname, 10000, 5000))))
def test_antitarget(self): """The 'antitarget' command.""" baits_fname = "formats/nv2_baits.interval_list" access_fname = "../data/access-5k-mappable.hg19.bed" self.assertLess(0, len(commands.do_antitarget(baits_fname))) self.assertLess(0, len( commands.do_antitarget(baits_fname, access_fname))) self.assertLess(0, len( commands.do_antitarget(baits_fname, access_fname, 200000))) self.assertLess(0, len( commands.do_antitarget(baits_fname, access_fname, 10000, 5000)))