Python do_antitarget示例

示例#1

文件： test_cnvlib.py 项目： JimmyLiJing/cnvkit

 def test_antitarget(self):
     """The 'antitarget' command."""
     baits = tabio.read_auto('formats/nv2_baits.interval_list')
     access = tabio.read_auto('../data/access-5k-mappable.hg19.bed')
     self.assertLess(0, len(commands.do_antitarget(baits)))
     self.assertLess(0, len(commands.do_antitarget(baits, access)))
     self.assertLess(0, len(commands.do_antitarget(baits, access, 200000)))
     self.assertLess(0, len(commands.do_antitarget(baits, access, 10000,
                                                   5000)))

示例#2

文件： test_cnvlib.py 项目： zengfengbo/cnvkit

 def test_antitarget(self):
     baits_fname = "formats/nv2_baits.interval_list"
     access_fname = "../data/access-5k-mappable.hg19.bed"
     self.assertTrue(0 < len(list(
         commands.do_antitarget(baits_fname))))
     self.assertTrue(0 < len(list(
         commands.do_antitarget(baits_fname, access_fname))))
     self.assertTrue(0 < len(list(
         commands.do_antitarget(baits_fname, access_fname, 200000))))
     self.assertTrue(0 < len(list(
         commands.do_antitarget(baits_fname, access_fname, 10000, 5000))))

示例#3

文件： test_cnvlib.py 项目： kyleabeauchamp/cnvkit

 def test_antitarget(self):
     """The 'antitarget' command."""
     baits_fname = "formats/nv2_baits.interval_list"
     access_fname = "../data/access-5k-mappable.hg19.bed"
     self.assertLess(0, len(commands.do_antitarget(baits_fname)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname, 200000)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname, 10000, 5000)))

示例#4

 def test_antitarget(self):
     """The 'antitarget' command."""
     baits_fname = "formats/nv2_baits.interval_list"
     access_fname = "../data/access-5k-mappable.hg19.bed"
     self.assertLess(0, len(commands.do_antitarget(baits_fname)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname, 200000)))
     self.assertLess(0, len(
         commands.do_antitarget(baits_fname, access_fname, 10000, 5000)))