def test_cdhit_from_seqs_synonym(self):
"""CD_HIT should return expected seqs with -c synonym"""
res = cdhit_from_seqs(dna_seqs, DNA, {'Similarity': 0.8})
self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs(self):
"""CD_HIT should return expected seqs"""
res = cdhit_from_seqs(dna_seqs, DNA, {'-c': 0.8})
self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs(self):
"""CD_HIT should return expected seqs"""
res = cdhit_from_seqs(protein_seqs, PROTEIN, {'-c': 0.8})
self.assertEqual(res.toFasta(), protein_expected)
def test_cdhit_from_seqs_synonym(self):
"""CD_HIT should return expected seqs with -c synonym"""
res = cdhit_from_seqs(dna_seqs, DNA, {'Similarity':0.8})
self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs(self):
"""CD_HIT should return expected seqs"""
res = cdhit_from_seqs(dna_seqs, DNA, {'-c':0.8})
self.assertEqual(res.toFasta(), dna_expected)
def test_cdhit_from_seqs(self):
"""CD_HIT should return expected seqs"""
res = cdhit_from_seqs(protein_seqs, PROTEIN, {'-c':0.8})
self.assertEqual(res.toFasta(), protein_expected)