def test_standard_code(self):
"""Standard genetic code from NCBI should have correct properties"""
sgc = GeneticCode(*self.NcbiStandard)
self.assertEqual(sgc.CodeSequence, "FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG")
self.assertEqual(sgc.StartCodonSequence, "---M---------------M---------------M----------------------------")
self.assertEqual(sgc.StartCodons, {"TTG": "M", "CTG": "M", "ATG": "M"})
self.assertEqual(sgc.ID, 1)
self.assertEqual(sgc.Name, "Standard Nuclear")
self.assertEqual(sgc["UUU"], "F")
self.assertEqual(sgc.isStart("ATG"), True)
self.assertEqual(sgc.isStart("AAA"), False)
self.assertEqual(sgc.isStop("UAA"), True)
self.assertEqual(sgc.isStop("AAA"), False)
self.assertEqual(len(sgc.SenseCodons), 61)
self.assertContains(sgc.SenseCodons, "AAA")
self.assertNotContains(sgc.SenseCodons, "TGA")
def test_standard_code(self):
"""Standard genetic code from NCBI should have correct properties"""
sgc = GeneticCode(*self.NcbiStandard)
self.assertEqual(sgc.CodeSequence,
'FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG')
self.assertEqual(sgc.StartCodonSequence,
'---M---------------M---------------M----------------------------')
self.assertEqual(sgc.StartCodons, {'TTG':'M', 'CTG':'M', 'ATG':'M'})
self.assertEqual(sgc.ID, 1)
self.assertEqual(sgc.Name, 'Standard Nuclear')
self.assertEqual(sgc['UUU'], 'F')
self.assertEqual(sgc.isStart('ATG'), True)
self.assertEqual(sgc.isStart('AAA'), False)
self.assertEqual(sgc.isStop('UAA'), True)
self.assertEqual(sgc.isStop('AAA'), False)
self.assertEqual(len(sgc.SenseCodons), 61)
self.assertContains(sgc.SenseCodons, 'AAA')
self.assertNotContains(sgc.SenseCodons, 'TGA')
