def test_sixframes(self):
"""GeneticCode sixframes should provide six-frame translation"""
class fake_rna(str):
"""Fake RNA class with reverse-complement"""
def __new__(cls, seq, rev):
return str.__new__(cls, seq)
def __init__(self, seq, rev):
self.seq = seq
self.rev = rev
def rc(self):
return self.rev
test_rna = fake_rna('AUGCUAACAUAAA', 'UUUAUGUUAGCAU')
# . . . . . . . . . .
sgc = GeneticCode(self.SGC)
self.assertEqual(sgc.sixframes(test_rna), [
'MLT*', 'C*HK', 'ANI', 'FMLA', 'LC*H', 'YVS'])
# should also actually work with an RNA or DNA sequence!!!
test_rna = RNA.makeSequence('AUGCUAACAUAAA')
self.assertEqual(sgc.sixframes(test_rna), [
'MLT*', 'C*HK', 'ANI', 'FMLA', 'LC*H', 'YVS'])
def test_sixframes(self):
"""GeneticCode sixframes should provide six-frame translation"""
class fake_rna(str):
"""Fake RNA class with reverse-complement"""
def __new__(cls, seq, rev):
return str.__new__(cls, seq)
def __init__(self, seq, rev):
self.seq = seq
self.rev = rev
def rc(self):
return self.rev
test_rna = fake_rna("AUGCUAACAUAAA", "UUUAUGUUAGCAU")
# . . . . . . . . . .
sgc = GeneticCode(self.SGC)
self.assertEqual(sgc.sixframes(test_rna), ["MLT*", "C*HK", "ANI", "FMLA", "LC*H", "YVS"])
# should also actually work with an RNA or DNA sequence!!!
test_rna = RNA.makeSequence("AUGCUAACAUAAA")
self.assertEqual(sgc.sixframes(test_rna), ["MLT*", "C*HK", "ANI", "FMLA", "LC*H", "YVS"])
def test_sixframes(self):
"""GeneticCode sixframes should provide six-frame translation"""
class fake_rna(str):
"""Fake RNA class with reverse-complement"""
def __new__(cls, seq, rev):
return str.__new__(cls, seq)
def __init__(self, seq, rev):
self.seq = seq
self.rev = rev
def rc(self):
return self.rev
test_rna = fake_rna('AUGCUAACAUAAA', 'UUUAUGUUAGCAU')
# . . . . . . . . . .
sgc = GeneticCode(self.SGC)
self.assertEqual(sgc.sixframes(test_rna),
['MLT*', 'C*HK', 'ANI', 'FMLA', 'LC*H', 'YVS'])
# should also actually work with an RNA or DNA sequence!!!
test_rna = RNA.makeSequence('AUGCUAACAUAAA')
self.assertEqual(sgc.sixframes(test_rna),
['MLT*', 'C*HK', 'ANI', 'FMLA', 'LC*H', 'YVS'])
