def testFromString(self):
label = Label.from_string("Q#2:CA")
self.assertEqual(label.residue, ProteinAlphabet.GLN)
self.assertEqual(label.rank, 2)
self.assertEqual(label.atom_name, 'CA')
def testFromString(self):
label = Label.from_string("Q#2:CA")
self.assertEqual(label.residue, ProteinAlphabet.GLN)
self.assertEqual(label.rank, 2)
self.assertEqual(label.atom_name, 'CA')
def testLabel(self):
shift = ChemShiftInfo(2, 'ALA', 'CA', 'C', 12)
self.assertEqual(shift.label, Label.from_shift(shift))
def testParse(self):
self.assertEqual(Label.parse("Q#2:CA"), ("Q", 2, 'CA'))
def testMatch(self):
atom = get_chain()[1]['CA']
shift = ChemShiftInfo(2, ProteinAlphabet.GLN, 'CA', ChemElements.C, 12)
self.assertTrue(Label.match(shift, atom))
def testGetAtom(self):
chain = get_chain()
self.assertEqual(Label.get_atom(chain, "Q#2:CA"), chain[1]['CA'])
def testFromAtom(self):
atom = get_chain()[1]['CA']
self.assertEqual(Label.from_atom(atom), "Q#2:CA")
def testFromShift(self):
shift = ChemShiftInfo(2, ProteinAlphabet.ALA, 'CA', ChemElements.C, 12)
self.assertEqual(Label.from_shift(shift), "A#2:CA")
def testBuild(self):
self.assertEqual(Label.build(ProteinAlphabet.ALA, 2, 'CA'), "A#2:CA")
def testLabel(self):
shift = ChemShiftInfo(2, 'ALA', 'CA', 'C', 12)
self.assertEqual(shift.label, Label.from_shift(shift))
def testParse(self):
self.assertEqual(Label.parse("Q#2:CA"), ("Q", 2, 'CA'))
def testMatch(self):
atom = get_chain()[1]['CA']
shift = ChemShiftInfo(2, ProteinAlphabet.GLN, 'CA', ChemElements.C, 12)
self.assertTrue(Label.match(shift, atom))
def testGetAtom(self):
chain = get_chain()
self.assertEqual(Label.get_atom(chain, "Q#2:CA"), chain[1]['CA'])
def testFromAtom(self):
atom = get_chain()[1]['CA']
self.assertEqual(Label.from_atom(atom), "Q#2:CA")
def testFromShift(self):
shift = ChemShiftInfo(2, ProteinAlphabet.ALA, 'CA', ChemElements.C, 12)
self.assertEqual(Label.from_shift(shift), "A#2:CA")
def testBuild(self):
self.assertEqual(Label.build(ProteinAlphabet.ALA, 2, 'CA'), "A#2:CA")