def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from cython_gsl import get_include, get_libraries, get_library_dir
config = Configuration('growth', parent_package, top_path)
cython(['core.pyx'], working_path=base_path)
cython(['power.pyx'], working_path=base_path)
cython(['correlation.pyx'], working_path=base_path)
cython(['lensing.pyx'], working_path=base_path)
cython(['emulator.pyx'], working_path=base_path)
config.add_extension('core', sources=['core.c', 'transfer.c', 'power_tools.c'],
include_dirs=[get_numpy_include_dirs(), get_include(), ''],
libraries=get_libraries(), library_dirs=[get_library_dir()],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
config.add_extension('power', sources=['power.c', 'transfer.c', 'power_tools.c'],
include_dirs=[get_numpy_include_dirs(), get_include(), ''],
libraries=get_libraries(), library_dirs=[get_library_dir()],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
config.add_extension('correlation', sources=['correlation.c', 'power_tools.c', 'transfer.c'],
include_dirs=[get_numpy_include_dirs(), get_include(), ''],
libraries=get_libraries(), library_dirs=[get_library_dir()],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
config.add_extension('lensing', sources=['lensing.c', 'power_tools.c', 'transfer.c'],
include_dirs=[get_numpy_include_dirs(), get_include(), ''],
libraries=get_libraries(), library_dirs=[get_library_dir()],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
sources = ['emulator.c', 'emulator/core.c', 'emulator/emu.c', 'emulator/emu_noh.c', \
'emulator/hubble.c', 'hod_emulator/core.c', 'hod_emulator/emu.c']
config.add_extension('emulator', sources=sources ,
include_dirs=[get_numpy_include_dirs(), get_include(), '', 'emulator', 'hod_emulator'],
libraries=get_libraries(), library_dirs=[get_library_dir(), 'emulator', 'hod_emulator'],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
return config
def configuration(parent_package='', top_path=None):
from numpy.distutils.misc_util import Configuration, get_numpy_include_dirs
from cython_gsl import get_include, get_libraries, get_library_dir
config = Configuration('halo', parent_package, top_path)
cython(['bias.pyx'], working_path=base_path)
config.add_extension('bias', sources=['bias.c', 'halo_tools.c'],
include_dirs=[get_numpy_include_dirs(), get_include(), ''],
libraries=get_libraries(), library_dirs=[get_library_dir()],
extra_compile_args=['-O3', '-w'],
extra_link_args=['-g'])
return config
from setuptools import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
import numpy as np
extensions = [
Extension(
"rough_front_expansion.cython",
sources=["rough_front_expansion/cython.pyx"],
language="c",
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir(),
np.get_include()]),
Extension(
"rough_front_expansion.cython_D2Q9",
sources=["rough_front_expansion/cython_D2Q9.pyx"],
language="c",
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[cython_gsl.get_cython_include_dir(),
np.get_include()])
]
setup(name='rough_front_expansion',
version='0.1',
packages=['rough_front_expansion'],
url='',
license='',
author='btweinstein',
from setuptools import setup
from distutils.extension import Extension
from Cython.Build import cythonize
import cython_gsl
import numpy as np
extensions = [
Extension("wigner_3j.wigner_3j",
sources=["wigner_3j/wigner_3j.pyx"],
language="c", libraries = cython_gsl.get_libraries(),
library_dirs = [cython_gsl.get_library_dir()],
include_dirs = [cython_gsl.get_cython_include_dir(), np.get_include()])
]
setup(
name='Max Help',
version='0.01',
packages=['wigner_3j'],
url='',
license='',
author='Bryan Weinstein',
author_email='*****@*****.**',
description='',
include_dirs = [cython_gsl.get_include(), np.get_include()],
ext_modules = cythonize(extensions, annotate=True, reload_support=True)
)
Extension('ndintegration', ['ndintegration.pyx'],
include_dirs=[np.get_include()],
libraries=['cuba'] ),
Extension('mymath', ['mymath.pyx'],
include_dirs=[np.get_include()]),
Extension('mpiutil', ['mpiutil.pyx'],
include_dirs=[np.get_include(),
mpi4py_include]),
Extension("sf", ["sf.pyx"],
include_dirs= [np.get_include(), cython_gsl.get_cython_include_dir(),
'../../clib', ],
libraries=cython_gsl.get_libraries()+['mysf'],
library_dirs=[cython_gsl.get_library_dir(), '../../clib/lib'] ),
Extension("alm", ["alm.pyx"],
include_dirs= [np.get_include(), '../../clib', ],
libraries=['mysf'],
library_dirs=[ '../../clib/lib'] ),
Extension("cgalio", ["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries()+["cuba"],
include_dirs=[np.get_include(), cython_gsl.get_cython_include_dir(), "../c/"],
library_dirs=[cython_gsl.get_library_dir(), './', "../c/"] )
]
setup( name = 'cython wrapper', cmdclass = {'build_ext': build_ext},
from distutils.core import setup
from Cython.Distutils import Extension
from Cython.Distutils import build_ext
import os
import cython_gsl
import numpy as np
from glob import glob
from os.path import splitext
ext_modules = []
for pyxfile in glob('*.pyx'):
ext = Extension(splitext(pyxfile)[0],
[pyxfile],
libraries=cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
cython_include_dirs=[cython_gsl.get_cython_include_dir()])
ext_modules.append(ext)
setup(
name="CythonGSL_examples",
version="0.2",
author="Thomas V. Wiecki",
author_email="*****@*****.**",
url="http://github.com/twiecki/CythonGSL",
description="CythonGSL examples.",
include_dirs = [np.get_include(), cython_gsl.get_include()],
cmdclass = {'build_ext': build_ext},
classifiers=[
'Development Status :: 3 - Alpha',
'Environment :: Console',
#from distutils.core import setup
from numpy.distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
from numpy.distutils.misc_util import Configuration
import numpy
import cython_gsl
setup(cmdclass={'build_ext': build_ext},
ext_modules=[
Extension("climf_fast", ["climf_fast.pyx"],
libraries=["m"] + cython_gsl.get_libraries(),
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[
numpy.get_include(),
cython_gsl.get_cython_include_dir()
])
])
import os
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import numpy as np
import cython_gsl
"""
"""
machine = os.environ['MACHINE']
if machine == 'mylaptop':
module = [
Extension("CGAL-IO", ["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries() + ["cuba"],
include_dirs=[
np.get_include(),
cython_gsl.get_cython_include_dir(), "../c/"
],
library_dirs=[cython_gsl.get_library_dir(), './', "../c/"]),
]
elif machine == 'gwln':
module = [
Extension(
"cgalio",
["cgalio.pyx", "../c/cgalio.c"],
libraries=cython_gsl.get_libraries() + ["cuba"],
include_dirs=[ #"/home/wangxin/workspace/lib/mylib/script/clib",
np.get_include(),
cython_gsl.get_cython_include_dir(), "../c/"
else:
use_cython = True
ext = '.pyx' if use_cython else '.c'
# from Cython.Compiler.Options import get_directive_defaults
# directive_defaults = get_directive_defaults()
# directive_defaults['linetrace'] = True
# directive_defaults['binding'] = True
omnibus_libraries = []
omnibus_library_dirs = []
omnibus_include_dirs = ['.']
if use_cython:
omnibus_libraries.extend(cython_gsl.get_libraries())
omnibus_library_dirs.append(cython_gsl.get_library_dir())
omnibus_include_dirs.append(cython_gsl.get_cython_include_dir())
cmdclass = {}
extensions = [
Extension(
"nd.change._omnibus",
["nd/change/_omnibus" + ext],
libraries=omnibus_libraries,
library_dirs=omnibus_library_dirs,
include_dirs=omnibus_include_dirs,
extra_compile_args=['-O3', '-fopenmp'],
extra_link_args=['-fopenmp'],
),
from distutils.core import setup
from distutils.extension import Extension
from Cython.Distutils import build_ext
import cython_gsl
import numpy as np
setup(cmdclass={'build_ext': build_ext},
ext_modules=[
Extension(
"definitions",
["definitions.pyx"],
libraries=cython_gsl.get_libraries() + ["gmp", "mpfr"],
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[np.get_include(),
cython_gsl.get_include()],
)
])
setup(include_dirs=[cython_gsl.get_include()],
cmdclass={'build_ext': build_ext},
ext_modules=[
Extension(
"froutines",
["froutines.pyx"],
libraries=cython_gsl.get_libraries() + ["gmp", "mpfr"],
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[np.get_include(),
cython_gsl.get_include()],
)
])
elif machine == 'cita':
mpi4py_include = '/home/xwang/workspace/software/anaconda/lib/python2.7/site-packages/mpi4py/include'
else:
raise Exception
src_dir = './'
#src_dir= '../c/'
#src_c = ['misc.c', 'kernel.c', 'abkernel.c']
#c_lib = #'libwigner.a'
kernel_src = ['covm.pyx']
print kernel_src
module = [
Extension("covm",
sources=[kernel_src[0]],
include_dirs=[
np.get_include(), mpi4py_include, src_dir,
cython_gsl.get_cython_include_dir()
],
libraries=cython_gsl.get_libraries() + ['m'],
library_dirs=[cython_gsl.get_library_dir(), './', src_dir]),
]
setup(name='Quadratic_Estimator_Cython',
cmdclass={'build_ext': build_ext},
ext_modules=module)
# all .pyx files in a folder
import setuptools
from Cython.Build import cythonize
from Cython.Distutils import Extension
from Cython.Distutils import build_ext
import numpy
import cython_gsl
libs = {
'libraries': cython_gsl.get_libraries(),
'library_dirs': [cython_gsl.get_library_dir()],
'include_dirs': [
cython_gsl.get_cython_include_dir(),
numpy.get_include(),
]
}
extensions = [
Extension("gbnet.cchain", ["gbnet/cchain.pyx"], **libs),
Extension("gbnet.cnodes", ["gbnet/cnodes.pyx"], **libs),
]
with open("README.md", "r") as fh:
long_description = fh.read()
setuptools.setup(
name='gbnet',
version='0.1.dev1',
author="Argenis Arriojas",
author_email="*****@*****.**",
description=
from distutils.core import setup, Extension
from Cython.Build import cythonize
import sys
import subprocess
import numpy as np
import cython_gsl
args = sys.argv[1:]
# Make a `cleanall` rule to get rid of intermediate and library files
if "cleanall" in args:
print "Deleting cython files..."
# Just in case the build directory was created by accident,
# note that shell=True should be OK here because the command is constant.
subprocess.Popen("rm -rf cythonrk4/*.c", shell=True, executable="/bin/bash")
subprocess.Popen("rm -rf cythonrk4/*.so", shell=True, executable="/bin/bash")
# Now do a normal clean
sys.argv[1] = "clean"
extensions = [Extension("cythonrk4/*", ["cythonrk4/*.pyx"],
include_dirs=[np.get_include(),
"/usr/local/include"],
libraries=["gsl", "gslcblas", "m"]+cython_gsl.get_libraries())]
setup(
# ext_modules = cythonize("cythonrk4/*.pyx", include_dirs=[np.get_include()])
ext_modules = cythonize(extensions)
)
else:
return name[:idx] + ext
class BuildExtWithoutPlatformSuffix(build_ext):
def get_ext_filename(self, ext_name):
filename = super().get_ext_filename(ext_name)
return get_ext_filename_without_platform_suffix(filename)
cmdclass_option = {'build_ext': BuildExtWithoutPlatformSuffix}
else:
raise ValueError(
'You are not using neither Python2 nor Python3, probably you are a time traveller from the Future or from the Past'
)
#cython gsl
cy_gsl_lib = cython_gsl.get_libraries()
cy_gsl_inc = cython_gsl.get_include()
cy_gsl_lib_dic = cython_gsl.get_library_dir()
#cython
cy_gsl_inc_cy = cython_gsl.get_cython_include_dir()
#numpy
np_inc = numpy.get_include()
gh = ['galpynamics/src/pot_halo/pot_c_ext/general_halo.pyx']
gh_ext = Extension('galpynamics.src.pot_halo.pot_c_ext.general_halo',
sources=gh)
ih = ['galpynamics/src/pot_halo/pot_c_ext/isothermal_halo.pyx']
ih_ext = Extension('galpynamics.src.pot_halo.pot_c_ext.isothermal_halo',
sources=ih)
from distutils.core import setup, Extension
from Cython.Build import cythonize, build_ext
import numpy
import cython_gsl
# Run: python setup.py build_ext --build-lib ./
extensions = [
Extension(
name="gsum.cutils",
sources=["gsum/cutils.pyx"],
# depends=['gsl/gsl_linalg.h', 'gsl/gsl_permutation.h'],
libraries=[*cython_gsl.get_libraries()],
library_dirs=[cython_gsl.get_library_dir()],
include_dirs=[
numpy.get_include(),
cython_gsl.get_cython_include_dir()
],
)
]
setup(
name='gsum',
packages=['gsum'],
# py_modules=[''],
include_dirs=[cython_gsl.get_include()],
cmdclass={'build_ext': build_ext},
ext_modules=cythonize(extensions, build_dir='gsum'),
version='0.1',
description='A Bayesian model of series convergence using Gaussian sums',
author='Jordan Melendez',