def make_plot(self, b):
controller = self.controller
b.description = 'Creating plot... Please Wait.'
b.disabled = True
try:
b.pvals = controller.pvals.copy()
if b.plot_type.value == 'Design Space (interactive)':
self.make_interactive_plot(b)
elif b.plot_type.value == 'Design Space':
self.make_static_plot(b)
elif b.plot_type.value == 'Stability':
self.make_stability_plot(b)
elif b.plot_type.value == 'Eigenvalues':
self.make_eigenvalue_plot(b)
else:
self.make_function_plot(b)
except Exception as e:
close_button = Button(description="Close")
error_message = '<div width="200px" style="float:center; text-align:center;">'
error_message += '<b>An error occured while plotting</b></div>'
error_window = Popup(children=[HTML(value=error_message),close_button])
close_button.window = error_window
close_button.on_click(lambda x: x.window.close())
if old_ipython is False:
error_window.box_style='danger'
close_button.float = 'center'
error_window.width='250px'
error_window.height='150px'
display(error_window)
b.description = 'Add Plot'
b.disabled = False
else:
b.description = 'Add Plot'
b.disabled = False
def __init__(self, name='', version='', equations=None, parameters=None,
get_parameters=None, auxiliary_variables=[], constraints=[],
symbols={}, resolve_cycles=False, resolve_codominance=False,
centered_axes=False, xaxis=None, yaxis=None, recast=True,
x_range=[1e-3, 1e3], y_range=[1e-3, 1e3],
zlim=None, by_signature=False, kinetic_orders=None,
included_cases=None, biological_constraints=[], resolution=100,
**kwargs):
'''
'''
setattr(self, 'ds', None)
setattr(self, 'equations', [])
setattr(self, 'name', name)
setattr(self, 'version', version)
setattr(self, 'pvals', None)
setattr(self, 'cyclical', resolve_cycles)
setattr(self, 'codominance', resolve_codominance)
setattr(self, 'recast', recast)
setattr(self, 'auxiliary', [])
setattr(self, 'constraints', [])
setattr(self, 'kinetic_orders', [])
setattr(self, 'symbols', symbols)
setattr(self, 'widget', Tab())
setattr(self, 'figures', None)
setattr(self, 'figure_data', [])
setattr(self, 'tables', None)
setattr(self, 'table_data', [])
setattr(self, 'display_system', None)
setattr(self, 'options', dict(kwargs))
self.options.update(center_axes=centered_axes,
xaxis=xaxis, yaxis=yaxis,
range_x=x_range, range_y=y_range, zlim=zlim,
by_signature=by_signature,
kinetic_orders=kinetic_orders,
get_parameters=get_parameters,
included_cases=included_cases,
biological_constraints=biological_constraints,
resolution=resolution)
if equations is not None:
self.equations = equations
if isinstance(equations, list) is False:
self.equations = [equations]
if auxiliary_variables is not None:
self.auxiliary = auxiliary_variables
if isinstance(auxiliary_variables, list) is False:
self.auxiliary = [auxiliary_variables]
if constraints is not None:
self.constraints = constraints
if isinstance(constraints, list) is False:
self.constraints = [constraints]
if parameters is not None:
self.pvals = dspace.VariablePool(names = parameters.keys())
self.pvals.update(parameters)
self.root = VBox(children=[self.widget])
display(self.root)
self.update_child('About', self.help_widget())
self.update_child('Main Menu', self.edit_equations_widget())
def modify_equations_widget(self, b):
self.ds = None
self.figure_data = []
self.table_data = []
self.widget.close()
self.widget = Tab()
display(self.root)
self.update_child('Main Menu', self.edit_equations_widget(editing=True))
def reload_widgets(self):
self.widget = Tab()
display(self.root)
self.update_child('Main Menu', self.edit_equations_widget())
if self.ds is None:
return
self.update_widgets()
self.figures.load_widgets()
