def test_make_nr_foundation_alignment_few(self): result = _make_nr_foundation_alignment(self.foundation_alignment, self.extension_genus_dic_few) self.assertEqual(list(result), [ BiologicalSequence("AAA---", id="PBB1", description="Phoma"), BiologicalSequence("AAG---", id="CBB1", description="Candida"), ])
def test_make_nr_foundation_alignment_few(self): result = _make_nr_foundation_alignment(self.foundation_alignment, self.extension_genus_dic_few) self.assertEqual(list(result), [ Sequence("AAA---", metadata={"id": "PBB1", "description": "Phoma"}), Sequence("AAG---", metadata={"id": "CBB1", "description": "Candida"}), ])
def test_make_nr_foundation_alignment_few(self): result = _make_nr_foundation_alignment(self.foundation_alignment, self.extension_genus_dic_few, self.graft_letter_g) self.assertEqual(list(result), [ Sequence("AAA---", metadata={ "id": "PBB1", "description": "Phoma" }), Sequence("AAG---", metadata={ "id": "CBB3", "description": "Candida" }), ])
def test_make_nr_foundation_alignment_none(self): result = _make_nr_foundation_alignment(self.foundation_alignment, self.extension_genus_dic_none) self.assertEqual(list(result), [])