def test_make_nr_foundation_alignment_few(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_few)
self.assertEqual(list(result), [
BiologicalSequence("AAA---", id="PBB1", description="Phoma"),
BiologicalSequence("AAG---", id="CBB1", description="Candida"),
])
def test_make_nr_foundation_alignment_few(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_few)
self.assertEqual(list(result), [
BiologicalSequence("AAA---", id="PBB1", description="Phoma"),
BiologicalSequence("AAG---", id="CBB1", description="Candida"),
])
def test_make_nr_foundation_alignment_few(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_few)
self.assertEqual(list(result), [
Sequence("AAA---", metadata={"id": "PBB1", "description": "Phoma"}),
Sequence("AAG---", metadata={"id": "CBB1", "description": "Candida"}),
])
def test_make_nr_foundation_alignment_few(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_few,
self.graft_letter_g)
self.assertEqual(list(result), [
Sequence("AAA---", metadata={
"id": "PBB1",
"description": "Phoma"
}),
Sequence("AAG---",
metadata={
"id": "CBB3",
"description": "Candida"
}),
])
def test_make_nr_foundation_alignment_none(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_none)
self.assertEqual(list(result), [])
def test_make_nr_foundation_alignment_none(self):
result = _make_nr_foundation_alignment(self.foundation_alignment,
self.extension_genus_dic_none)
self.assertEqual(list(result), [])
