def get(self, uuidname, cancertype, surType):
checkplot = CheckGSVASurvivalSingleCancerType(
gsxa_uuid=uuidname,
cancertype=cancertype,
surType=surType,
name_uuid="cnvgenesetsurvivalsinglecancer_uuid",
purpose="cnvgenesetimmunesinglecancer",
rplot="cnv_geneset_immune_singlecancer.R",
precol="preanalysised",
gsxacol="preanalysised_cnvgeneset",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {"cnvgenesetimmunesinglecanceruuid": res["uuid"]}
def get(self, uuidname, cancertype, surType):
checkplot = CheckGSVASurvivalSingleCancerType(
gsxa_uuid=uuidname,
cancertype=cancertype,
surType=surType,
name_uuid="gsvasurvivalsinglecancer_uuid",
purpose="gsvasurvivalsinglecancer",
rplot="gsva_survival_single_cancer.R",
precol="preanalysised",
gsxacol="preanalysised_gsva",
)
res = checkplot.check_run()
if res["run"]:
checkplot.plot()
return {"gsvasurvivalsinglecanceruuid": res["uuid"]}