def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
trackCount = 0
for subTrackName in ProcTrackOptions.getSubtypes(self._genome, trackName, True):
subTrackCount = TrackInfo(self._genome, trackName + [subTrackName]).subTrackCount
if subTrackCount:
trackCount += subTrackCount
if ti.isValid():
trackCount += 1
ti.subTrackCount = trackCount
ti.store()
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
trackCount = 0
for subTrackName in ProcTrackOptions.getSubtypes(
self._genome, trackName, True):
subTrackCount = TrackInfo(self._genome,
trackName + [subTrackName]).subTrackCount
if subTrackCount:
trackCount += subTrackCount
if ti.isValid():
trackCount += 1
ti.subTrackCount = trackCount
ti.store()
def shouldPreProcessGESource(trackName, geSource, allowOverlaps):
genome = geSource.getGenome()
storedInfo = TrackInfo(genome, trackName)
validFilesExist = PreProcessUtils.preProcFilesExist(genome, trackName, allowOverlaps) and \
storedInfo.isValid()
if not geSource.hasOrigFile():
return False if validFilesExist or geSource.isExternal() else True
storedAsAccordingToGeSource = \
(PreProcessUtils.constructId(geSource) == storedInfo.id and \
geSource.getVersion() == storedInfo.preProcVersion)
#from gtrackcore.application.LogSetup import logMessage
#logMessage(geSource.getGenome())
#logMessage(':'.join(trackName))
#logMessage('%s %s %s %s %s' % (PreProcessUtils.preProcFilesExist(genome, trackName, allowOverlaps), \
# storedInfo.isValid(), \
# geSource.hasOrigFile(), \
# PreProcessUtils.constructId(geSource) == storedInfo.id, \
# geSource.getVersion() == storedInfo.preProcVersion))
return not (validFilesExist and storedAsAccordingToGeSource)
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
if ti.isValid():
ti.subTrackCount = 1
ti.store()
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
if ti.isValid():
ti.subTrackCount = 1
ti.store()
