def finalize(self, username, printMsg):
ti = TrackInfo(self._genome, self._trackName)
ti.fileType = self._fileSuffix
trackFormat = self.getTrackFormat()
ti.trackFormatName = trackFormat.getFormatName()
ti.markType = trackFormat.getValTypeName()
ti.weightType = trackFormat.getWeightTypeName()
ti.undirectedEdges = self._undirectedEdges
ti.preProcVersion = self._preProcVersion
ti.origElCount = self._numElements[True]
ti.clusteredElCount = self._numElements[False]
if trackFormat.isDense() and trackFormat.isInterval():
ti.origElCount -= len(self._boundingRegionTuples[True])
ti.clusteredElCount -= len(self._boundingRegionTuples[False])
if True in self._valCategories:
ti.numValCategories = len(self._valCategories[True])
if False in self._valCategories:
ti.numClusteredValCategories = len(self._valCategories[False])
if True in self._edgeWeightCategories:
ti.numEdgeWeightCategories = len(self._edgeWeightCategories[True])
ti.id = self._id
ti.timeOfPreProcessing = datetime.datetime.now()
ti.lastUpdatedBy = username
if ti.hbContact == '':
ti.hbContact = username
ti.store()
if printMsg:
print "Finished preprocessing track '%s'." % ':'.join(
self._trackName)
print
self.removeEntry()
def finalize(self, username, printMsg):
ti = TrackInfo(self._genome, self._trackName)
ti.fileType = self._fileSuffix
trackFormat = self.getTrackFormat()
ti.trackFormatName = trackFormat.getFormatName()
ti.markType = trackFormat.getValTypeName()
ti.weightType = trackFormat.getWeightTypeName()
ti.undirectedEdges = self._undirectedEdges
ti.preProcVersion = self._preProcVersion
ti.origElCount = self._numElements[True]
ti.clusteredElCount = self._numElements[False]
if trackFormat.isDense() and trackFormat.isInterval():
ti.origElCount -= len(self._boundingRegionTuples[True])
ti.clusteredElCount -= len(self._boundingRegionTuples[False])
if True in self._valCategories:
ti.numValCategories = len(self._valCategories[True])
if False in self._valCategories:
ti.numClusteredValCategories = len(self._valCategories[False])
if True in self._edgeWeightCategories:
ti.numEdgeWeightCategories = len(self._edgeWeightCategories[True])
ti.id = self._id
ti.timeOfPreProcessing = datetime.datetime.now()
ti.lastUpdatedBy = username
if ti.hbContact == '':
ti.hbContact = username
ti.store()
if printMsg:
print "Finished preprocessing track '%s'." % ':'.join(self._trackName)
print
self.removeEntry()
