def test_no_genes_error(self) -> None:
with pytest.raises(ValueError):
create_graphkb_sv_notation(
IprStructuralVariant({
'gene1': '',
'gene2': '',
'exon1': 1,
'exon2': 2,
'key': 'x'
}))
def test_one_exon_missing(self) -> None:
notation = create_graphkb_sv_notation(
IprStructuralVariant({
'gene1': 'A',
'gene2': 'B',
'exon1': '',
'exon2': 2
}))
assert notation == '(A,B):fusion(e.?,e.2)'
def test_first_gene_missing(self) -> None:
notation = create_graphkb_sv_notation(
IprStructuralVariant({
'gene1': '',
'gene2': 'B',
'exon1': 1,
'exon2': 2
}))
assert notation == '(B,?):fusion(e.2,e.1)'
def test_both_genes_and_exons(self) -> None:
notation = create_graphkb_sv_notation(
IprStructuralVariant({
'gene1': 'A',
'gene2': 'B',
'exon1': 1,
'exon2': 2
}))
assert notation == '(A,B):fusion(e.1,e.2)'