def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slidx = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '', 'single')
getf = GetFields(fields, str_f, pt0, pt1)
# host allocations
ehs = common_update.generate_random_ehs(nx, ny, nz, fields.dtype)
eh_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs) )
fields.set_eh_bufs(*ehs)
# verify
getf.get_event().wait()
for str_f in str_fs:
original = eh_dict[str_f][slidx]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slidx = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '')
getf = GetFields(fields, str_f, pt0, pt1)
# host allocations
eh_dict = {}
for sf in str_fs:
eh_dict[sf] = np.random.rand(*fields.ns).astype(fields.dtype)
cl.enqueue_copy(fields.queue, fields.get_buf(sf), eh_dict[sf])
# verify
getf.get_event().wait()
for str_f in str_fs:
original = eh_dict[str_f][slidx]
copy = getf.get_fields(str_f)
self.assertEqual(np.abs(eh_dict[str_f][slidx] - getf.get_fields(str_f)).max(), 0, self.args)
def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slidx = common.slices_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '', 'single')
getf = GetFields(fields, str_f, pt0, pt1)
# host allocations
ehs = common_random.generate_ehs(nx, ny, nz, fields.dtype)
eh_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs) )
fields.set_eh_bufs(*ehs)
# verify
getf.get_event().wait()
for str_f in str_fs:
original = eh_dict[str_f][slidx]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slidx = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '')
getf = GetFields(fields, str_f, pt0, pt1)
# host allocations
eh_dict = {}
for sf in str_fs:
eh_dict[sf] = np.random.rand(*fields.ns).astype(fields.dtype)
cl.enqueue_copy(fields.queue, fields.get_buf(sf), eh_dict[sf])
# verify
getf.get_event().wait()
for str_f in str_fs:
original = eh_dict[str_f][slidx]
copy = getf.get_fields(str_f)
self.assertEqual(
np.abs(eh_dict[str_f][slidx] - getf.get_fields(str_f)).max(),
0, self.args)
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = gpu.Fields(context, device, nx, ny, nz, coeff_use,
precision_float)
gpu.Core(fields)
fields_ref = naive.Fields(nx, ny, nz, precision_float)
naive.Core(fields_ref)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ['ex', 'ey', 'ez', 'hx', 'hy', 'hz']
ehs = common_random.generate_ehs(nx, ny, nz, dtype, ufunc)
fields.set_eh_bufs(*ehs)
fields_ref.set_ehs(*ehs)
ces, chs = common_random.generate_cs(nx, ny, nz, dtype, coeff_use)
if 'e' in coeff_use:
fields.set_ce_bufs(*ces)
fields_ref.set_ces(*ces)
if 'h' in coeff_use:
fields.set_ch_bufs(*chs)
fields_ref.set_chs(*chs)
tmpf = np.zeros(fields.ns, dtype=dtype)
# update
if ufunc == 'e':
for tstep in xrange(0, tmax):
fields.update_e()
fields_ref.update_e()
for strf, eh in zip(strf_list, ehs)[:3]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(fields_ref.get(strf) - tmpf)
max_diff = np.abs(fields_ref.get(strf) - tmpf).max()
self.assertEqual(
norm, 0,
'%s, %s, %g, %g' % (self.args, strf, norm, max_diff))
elif ufunc == 'h':
for tstep in xrange(0, tmax):
fields.update_h()
fields_ref.update_h()
for strf, eh in zip(strf_list, ehs)[3:]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(fields_ref.get(strf) - tmpf)
max_diff = np.abs(fields_ref.get(strf) - tmpf).max()
self.assertEqual(
norm, 0,
'%s, %s, %g, %g' % (self.args, strf, norm, max_diff))
def runTest(self):
axis, nx, ny, nz, precision_float = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '', precision_float)
pbc = Pbc(fields, axis)
# allocations
ehs = common_update.generate_random_ehs(nx, ny, nz, fields.dtype)
fields.set_eh_bufs(*ehs)
# update
fields.update_e()
fields.update_h()
# verify
getf0, getf1 = {}, {}
strfs_e = {'x':['ey', 'ez'], 'y':['ex', 'ez'], 'z':['ex', 'ey']}[axis]
strfs_h = {'x':['hy', 'hz'], 'y':['hx', 'hz'], 'z':['hx', 'hy']}[axis]
pt0 = (0, 0, 0)
pt1 = { 'x': (0, ny-2, nz-2), \
'y': (nx-2, 0, nz-2), \
'z': (nx-2, ny-2, 0) }[axis]
getf0['e'] = GetFields(fields, strfs_e, pt0, pt1)
pt0 = { 'x': (nx-1, 0, 0), \
'y': (0, ny-1, 0), \
'z': (0, 0, nz-1) }[axis]
pt1 = { 'x': (nx-1, ny-2, nz-2), \
'y': (nx-2, ny-1, nz-2), \
'z': (nx-2, ny-2, nz-1) }[axis]
getf1['e'] = GetFields(fields, strfs_e, pt0, pt1)
pt0 = { 'x': (0, 1, 1), \
'y': (1, 0, 1), \
'z': (1, 1, 0) }[axis]
pt1 = { 'x': (0, ny-1, nz-1), \
'y': (nx-1, 0, nz-1), \
'z': (nx-1, ny-1, 0) }[axis]
getf0['h'] = GetFields(fields, strfs_h, pt0, pt1)
pt0 = { 'x': (nx-1, 1, 1), \
'y': (1, ny-1, 1), \
'z': (1, 1, nz-1) }[axis]
pt1 = (nx-1, ny-1, nz-1)
getf1['h'] = GetFields(fields, strfs_h, pt0, pt1)
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields() )
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, self.args, eh))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slices = common.slices_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = Fields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
getf = GetFields(nodef, str_f, (0, 0, 0),
(nodef.nx - 1, ny - 1, nz - 1))
setf = SetFields(nodef, str_f, pt0, pt1, is_array)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1, len(str_fs))
value = np.random.rand(*shape).astype(nodef.dtype)
split_value = np.split(value, len(str_fs))
split_value_dict = dict(zip(str_fs, split_value))
else:
value = np.random.ranf()
# host allocations
global_ehs = [np.zeros(nodef.ns, dtype) for i in range(6)]
eh_dict = dict(zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], global_ehs))
# verify
for str_f in str_fs:
if is_array:
eh_dict[str_f][slices] = split_value_dict[str_f]
else:
eh_dict[str_f][slices] = value
setf.set_fields(value)
gpu_getf = gpu.GetFields(mainf_list[0], str_fs, (0, 0, 0),
(nx - 1, ny - 1, nz - 1))
gpu_getf.get_event().wait()
getf.wait()
for str_f in str_fs:
original = eh_dict[str_f]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
#if norm != 0:
#print '\ngpu getf\n', gpu_getf.get_fields(str_f)
#print original[slices]
#print copy[slices]
self.assertEqual(norm, 0, '%s, %g, %s' % (self.args, norm, str_f))
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
qtask = cpu.QueueTask()
fields = gpu.Fields(context, device, qtask, nx, ny, nz, coeff_use, precision_float)
gpu.Core(fields)
fields_ref = naive.Fields(nx, ny, nz, precision_float, segment_nbytes=64)
naive.Core(fields_ref)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ['ex', 'ey', 'ez', 'hx', 'hy', 'hz']
ehs = common_random.generate_ehs(nx, ny, nz, dtype, ufunc)
fields.set_eh_bufs(*ehs)
fields_ref.set_ehs(*ehs)
ces, chs = common_random.generate_cs(nx, ny, nz, dtype, coeff_use)
if 'e' in coeff_use:
fields.set_ce_bufs(*ces)
fields_ref.set_ces(*ces)
if 'h' in coeff_use:
fields.set_ch_bufs(*chs)
fields_ref.set_chs(*chs)
tmpf = np.zeros(fields.ns_pitch, dtype=dtype)
# update
if ufunc == 'e':
for tstep in xrange(0, tmax):
fields.update_e()
fields_ref.update_e()
qtask.enqueue_barrier()
for strf, eh in zip(strf_list, ehs)[:3]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(fields_ref.get(strf) - tmpf)
max_diff = np.abs(fields_ref.get(strf) - tmpf).max()
self.assertEqual(norm, 0, '%s, %s, %g, %g' % (self.args, strf, norm, max_diff) )
elif ufunc == 'h':
for tstep in xrange(0, tmax):
fields.update_h()
fields_ref.update_h()
for strf, eh in zip(strf_list, ehs)[3:]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(fields_ref.get(strf) - tmpf)
max_diff = np.abs(fields_ref.get(strf) - tmpf).max()
self.assertEqual(norm, 0, '%s, %s, %g, %g' % (self.args, strf, norm, max_diff) )
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slices = common.slices_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append( cpu.Fields(nx, ny, nz) )
nodef = Fields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
getf = GetFields(nodef, str_f, (0, 0, 0), (nodef.nx-1, ny-1, nz-1))
setf = SetFields(nodef, str_f, pt0, pt1, is_array)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1, len(str_fs))
value = np.random.rand(*shape).astype(nodef.dtype)
split_value = np.split(value, len(str_fs))
split_value_dict = dict( zip(str_fs, split_value) )
else:
value = np.random.ranf()
# host allocations
global_ehs = [np.zeros(nodef.ns, dtype) for i in range(6)]
eh_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], global_ehs) )
# verify
for str_f in str_fs:
if is_array:
eh_dict[str_f][slices] = split_value_dict[str_f]
else:
eh_dict[str_f][slices] = value
setf.set_fields(value)
gpu_getf = gpu.GetFields(mainf_list[0], str_fs, (0, 0, 0), (nx-1, ny-1, nz-1))
gpu_getf.get_event().wait()
getf.wait()
for str_f in str_fs:
original = eh_dict[str_f]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
#if norm != 0:
#print '\ngpu getf\n', gpu_getf.get_fields(str_f)
#print original[slices]
#print copy[slices]
self.assertEqual(norm, 0, '%s, %g, %s' % (self.args, norm, str_f))
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, coeff_use,
precision_float)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ['ex', 'ey', 'ez', 'hx', 'hy', 'hz']
ehs = common_update.generate_random_ehs(ufunc, nx, ny, nz, dtype)
pad_arr = np.zeros(fields.ns_pad, dtype=dtype)
for strf, eh in zip(strf_list, ehs):
eh_pitch = np.append(eh, pad_arr, 2).copy('C')
cl.enqueue_copy(fields.queue, fields.get_buf(strf), eh_pitch)
ces, chs = common_update.generate_random_cs(coeff_use, nx, ny, nz,
dtype)
if 'e' in coeff_use:
fields.set_ce_bufs(*ces)
if 'h' in coeff_use:
fields.set_ch_bufs(*chs)
tmpf = np.zeros(fields.ns_pitch, dtype=dtype)
# update
if ufunc == 'e':
for tstep in xrange(0, tmax):
fields.update_e()
common_update.update_e(ehs, ces)
for strf, eh in zip(strf_list, ehs):
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slz])
max_diff = np.abs(eh - tmpf[:, :, fields.slz]).max()
self.assertEqual(norm, 0, '%s, %s, %g, %g' % \
(self.args, strf, norm, max_diff) )
elif ufunc == 'h':
for tstep in xrange(0, tmax):
fields.update_h()
common_update.update_h(ehs, chs)
for strf, eh in zip(strf_list, ehs):
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slz])
max_diff = np.abs(eh - tmpf[:, :, fields.slz]).max()
self.assertEqual(norm, 0, '%s, %s, %g, %g' % \
(self.args, strf, norm, max_diff) )
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, coeff_use, precision_float)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ["ex", "ey", "ez", "hx", "hy", "hz"]
ehs = common_update.generate_random_ehs(ufunc, nx, ny, nz, dtype)
pad_arr = np.zeros(fields.ns_pad, dtype=dtype)
for strf, eh in zip(strf_list, ehs):
eh_pitch = np.append(eh, pad_arr, 2).copy("C")
cl.enqueue_copy(fields.queue, fields.get_buf(strf), eh_pitch)
ces, chs = common_update.generate_random_cs(coeff_use, nx, ny, nz, dtype)
if "e" in coeff_use:
fields.set_ce_bufs(*ces)
if "h" in coeff_use:
fields.set_ch_bufs(*chs)
tmpf = np.zeros(fields.ns_pitch, dtype=dtype)
# update
if ufunc == "e":
for tstep in xrange(0, tmax):
fields.update_e()
common_update.update_e(ehs, ces)
for strf, eh in zip(strf_list, ehs):
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slz])
max_diff = np.abs(eh - tmpf[:, :, fields.slz]).max()
self.assertEqual(norm, 0, "%s, %s, %g, %g" % (self.args, strf, norm, max_diff))
elif ufunc == "h":
for tstep in xrange(0, tmax):
fields.update_h()
common_update.update_h(ehs, chs)
for strf, eh in zip(strf_list, ehs):
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slz])
max_diff = np.abs(eh - tmpf[:, :, fields.slz]).max()
self.assertEqual(norm, 0, "%s, %s, %g, %g" % (self.args, strf, norm, max_diff))
def runTest(self):
if len(self.args) == 6:
nx, ny, nz, str_f, pt0, pt1 = self.args
src_is_array = False
elif len(self.args) == 7:
nx, ny, nz, str_f, pt0, pt1, src_is_array = self.args
slidx = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '')
setf = SetFields(fields, str_f, pt0, pt1, src_is_array)
# generate random source
if src_is_array:
shape = list(common.shape_two_points(pt0, pt1))
shape[0] *= len(str_fs)
value = np.random.rand(*shape).astype(fields.dtype)
split_value = np.split(value, len(str_fs))
split_value_dict = dict(zip(str_fs, split_value))
else:
value = np.random.ranf()
# host allocations
eh_dict = {}
for sf in str_fs:
eh_dict[sf] = np.zeros(fields.ns, dtype=fields.dtype)
gpu_eh = np.zeros(fields.ns, dtype=fields.dtype)
# verify
for str_f in str_fs:
if src_is_array:
eh_dict[str_f][slidx] = split_value_dict[str_f]
else:
eh_dict[str_f][slidx] = value
setf.set_fields(value)
for str_f in str_fs:
cl.enqueue_copy(fields.queue, gpu_eh, fields.get_buf(str_f))
self.assertEqual(
np.abs(eh_dict[str_f] - gpu_eh).max(), 0, self.args)
def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slices = common.slices_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append( cpu.Fields(nx, ny, nz) )
nodef = Fields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
getf = GetFields(nodef, str_f, pt0, pt1)
# generate random source
global_ehs = [np.zeros(nodef.ns, dtype) for i in range(6)]
eh_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], global_ehs) )
for i, f in enumerate(mainf_list[:-1]):
nx, ny, nz = f.ns
ehs = common_random.generate_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for eh, geh in zip(ehs, global_ehs):
geh[anx[i]:anx[i+1],:,:] = eh[:-1,:,:]
f = mainf_list[-1]
nx, ny, nz = f.ns
ehs = common_random.generate_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
for eh, geh in zip(ehs, global_ehs):
geh[anx[-2]:anx[-1]+1,:,:] = eh[:]
# verify
getf.wait()
for str_f in str_fs:
original = eh_dict[str_f][slices]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1 = self.args
slices = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
getf = NodeGetFields(nodef, str_f, pt0, pt1)
# generate random source
global_ehs = [np.zeros(nodef.ns, dtype) for i in range(6)]
eh_dict = dict(zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], global_ehs))
for i, f in enumerate(mainf_list[:-1]):
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for eh, geh in zip(ehs, global_ehs):
geh[anx[i]:anx[i + 1], :, :] = eh[:-1, :, :]
f = mainf_list[-1]
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
for eh, geh in zip(ehs, global_ehs):
geh[anx[-2]:anx[-1] + 1, :, :] = eh[:]
# verify
getf.wait()
for str_f in str_fs:
original = eh_dict[str_f][slices]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
if len(self.args) == 6:
nx, ny, nz, str_f, pt0, pt1 = self.args
src_is_array = False
elif len(self.args) == 7:
nx, ny, nz, str_f, pt0, pt1, src_is_array = self.args
slidx = common.slice_index_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '')
setf = SetFields(fields, str_f, pt0, pt1, src_is_array)
# generate random source
if src_is_array:
shape = list( common.shape_two_points(pt0, pt1) )
shape[0] *= len(str_fs)
value = np.random.rand(*shape).astype(fields.dtype)
split_value = np.split(value, len(str_fs))
split_value_dict = dict( zip(str_fs, split_value) )
else:
value = np.random.ranf()
# host allocations
eh_dict = {}
for sf in str_fs:
eh_dict[sf] = np.zeros(fields.ns, dtype=fields.dtype)
gpu_eh = np.zeros(fields.ns, dtype=fields.dtype)
# verify
for str_f in str_fs:
if src_is_array:
eh_dict[str_f][slidx] = split_value_dict[str_f]
else:
eh_dict[str_f][slidx] = value
setf.set_fields(value)
for str_f in str_fs:
cl.enqueue_copy(fields.queue, gpu_eh, fields.get_buf(str_f))
self.assertEqual(np.abs(eh_dict[str_f] - gpu_eh).max(), 0, self.args)
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slidx = common.slices_two_points(pt0, pt1)
str_fs = common.convert_to_tuple(str_f)
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
qtask = QueueTask()
fields = Fields(context, device, qtask, nx, ny, nz, '', 'single')
setf = SetFields(fields, str_f, pt0, pt1, is_array)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1, len(str_fs))
value = np.random.rand(*shape).astype(fields.dtype)
split_value = np.split(value, len(str_fs))
split_value_dict = dict( zip(str_fs, split_value) )
else:
value = np.random.ranf()
# host allocations
ehs = [np.zeros(fields.ns, dtype=fields.dtype) for i in range(6)]
eh_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs) )
gpu_eh = np.zeros(fields.ns_pitch, dtype=fields.dtype)
# verify
for str_f in str_fs:
if is_array:
eh_dict[str_f][slidx] = split_value_dict[str_f]
else:
eh_dict[str_f][slidx] = value
setf.set_fields(value)
setf.mainf.enqueue_barrier()
for str_f in str_fs:
cl.enqueue_copy(fields.queue, gpu_eh, fields.get_buf(str_f))
original = eh_dict[str_f]
copy = gpu_eh[:,:,fields.slice_z]
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slices = common.slice_index_two_points(pt0, pt1)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1)
value = np.random.rand(*shape).astype(np.float32)
else:
value = np.random.ranf()
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
tfunc = lambda tstep: np.sin(0.03 * tstep)
incident = NodeDirectIncident(nodef, str_f, pt0, pt1, tfunc, value)
# allocations for verify
eh = np.zeros(nodef.ns, dtype)
getf = NodeGetFields(nodef, str_f, pt0, pt1)
# verify
eh[slices] = dtype(value) * dtype(tfunc(1))
e_or_h = str_f[0]
nodef.update_e()
nodef.update_h()
getf.wait()
original = eh[slices]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slices = common.slice_index_two_points(pt0, pt1)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1)
value = np.random.rand(*shape).astype(np.float32)
else:
value = np.random.ranf()
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append( cpu.Fields(nx, ny, nz) )
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
anx = nodef.accum_nx_list
tfunc = lambda tstep: np.sin(0.03*tstep)
incident = NodeDirectIncident(nodef, str_f, pt0, pt1, tfunc, value)
# allocations for verify
eh = np.zeros(nodef.ns, dtype)
getf = NodeGetFields(nodef, str_f, pt0, pt1)
# verify
eh[slices] = dtype(value) * dtype(tfunc(1))
e_or_h = str_f[0]
nodef.update_e()
nodef.update_h()
getf.wait()
original = eh[slices]
copy = getf.get_fields(str_f)
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slice_xyz = common.slices_two_points(pt0, pt1)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1)
value = np.random.rand(*shape).astype(np.float32)
else:
value = np.random.ranf()
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
qtask = QueueTask()
fields = Fields(context, device, qtask, nx, ny, nz, '', 'single')
tfunc = lambda tstep: np.sin(0.03 * tstep)
incident = IncidentDirect(fields, str_f, pt0, pt1, tfunc, value)
# host allocations
eh = np.zeros(fields.ns_pitch, dtype=fields.dtype)
# verify
eh[slice_xyz] = fields.dtype(value) * fields.dtype(tfunc(1))
fields.update_e()
fields.update_h()
fields.enqueue_barrier()
copy_eh_buf = fields.get_buf(str_f)
copy_eh = np.zeros_like(eh)
cl.enqueue_copy(fields.queue, copy_eh, copy_eh_buf)
original = eh[slice_xyz]
copy = copy_eh[slice_xyz]
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz, str_f, pt0, pt1, is_array = self.args
slice_xyz = common.slices_two_points(pt0, pt1)
# generate random source
if is_array:
shape = common.shape_two_points(pt0, pt1)
value = np.random.rand(*shape).astype(np.float32)
else:
value = np.random.ranf()
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
qtask = QueueTask()
fields = Fields(context, device, qtask, nx, ny, nz, '', 'single')
tfunc = lambda tstep: np.sin(0.03*tstep)
incident = IncidentDirect(fields, str_f, pt0, pt1, tfunc, value)
# host allocations
eh = np.zeros(fields.ns_pitch, dtype=fields.dtype)
# verify
eh[slice_xyz] = fields.dtype(value) * fields.dtype(tfunc(1))
fields.update_e()
fields.update_h()
fields.enqueue_barrier()
copy_eh_buf = fields.get_buf(str_f)
copy_eh = np.zeros_like(eh)
cl.enqueue_copy(fields.queue, copy_eh, copy_eh_buf)
original = eh[slice_xyz]
copy = copy_eh[slice_xyz]
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g' % (self.args, norm))
def runTest(self):
nx, ny, nz = self.args
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append( cpu.Fields(nx, ny, nz) )
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
# buffer instance
nodef.append_buffer_fields(cpu.Fields(3, ny, nz, mpi_type='x-'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, nz, mpi_type='y+'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, nz, mpi_type='y-'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, ny, mpi_type='z+'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, ny, mpi_type='z-'))
exchange = NodeExchange(nodef)
# generate random source
for f in mainf_list[:-1]:
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for f in nodef.cpuf_dict.values():
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
# verify
exchange.update_e()
exchange.update_h()
getf0, getf1 = {}, {}
# mainf list
self.gpu, self.cpu = gpu, cpu
for f0, f1 in zip(mainf_list[:-1], mainf_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, 0, 0), (f0.nx-1, f0.ny-2, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ey', 'ez'], \
(0, 0, 0), (0, f1.ny-2, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hy', 'hz'], \
(f0.nx-1, 1, 1), (f0.nx-1, f0.ny-1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hy', 'hz'], \
(0, 1, 1), (0, f1.ny-1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm(getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%s, %g, %s, %s, %s' % \
(self.args, norm, 'mainf', \
getf0[eh].mainf.device_type, getf1[eh].mainf.device_type) )
# buffer 'x-'
f0, f1 = nodef.cpuf_dict['x-'], mainf_list[0]
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, 0, 0), (f0.nx-1, f0.ny-2, f0.nz-2))
getf1['e'] = gpu.GetFields(f1, ['ey', 'ez'], \
(1, 0, 0), (1, f1.ny-2, f1.nz-2))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, 1, 1), (f0.nx-2, f0.ny-1, f0.nz-1))
getf1['h'] = gpu.GetFields(f1, ['hy', 'hz'], \
(0, 1, 1), (0, f1.ny-1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'x-', eh) )
# buffer 'y+'
anx_list = nodef.accum_nx_list
f1 = nodef.cpuf_dict['y+']
for f0, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ex', 'ez'], \
(0, f0.ny-1, 0), (f0.nx-2, f0.ny-1, f0.nz-2))
getf1['e'] = cpu.GetFields(f1, ['ey', 'ez'], \
(1, anx0, 0), (1, anx1-1, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hx', 'hz'], \
(1, f0.ny-2, 1), (f0.nx-1, f0.ny-2, f0.nz-1))
getf1['h'] = cpu.GetFields(f1, ['hy', 'hz'], \
(0, anx0+1, 1), (0, anx1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y+', eh) )
# buffer 'y-'
f0 = nodef.cpuf_dict['y-']
for f1, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, anx0, 0), (f0.nx-1, anx1-1, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ex', 'ez'], \
(0, 1, 0), (f1.nx-2, 1, f1.nz-2))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, anx0+1, 1), (f0.nx-2, anx1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hx', 'hz'], \
(1, 0, 1), (f1.nx-1, 0, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y-', eh) )
# buffer 'z+'
f1 = nodef.cpuf_dict['z+']
for f0, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ex', 'ey'], \
(0, 0, f0.nz-1), (f0.nx-2, f0.ny-2, f0.nz-1))
getf1['e'] = cpu.GetFields(f1, ['ey', 'ez'], \
(1, anx0, 0), (1, anx1-1, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hx', 'hy'], \
(1, 1, f0.nz-2), (f0.nx-1, f0.ny-1, f0.nz-2))
getf1['h'] = cpu.GetFields(f1, ['hy', 'hz'], \
(0, anx0+1, 1), (0, anx1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'z+', eh) )
# buffer 'z-'
f0 = nodef.cpuf_dict['z-']
for f1, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, anx0, 0), (f0.nx-1, anx1-1, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ex', 'ey'], \
(0, 0, 1), (f1.nx-2, f1.ny-2, 1))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, anx0+1, 1), (f0.nx-2, anx1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hx', 'hy'], \
(1, 1, 0), (f1.nx-1, f1.ny-1, 0))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'z-', eh) )
size = comm.Get_size() is_plot = False #nx, ny, nz = 240, 256, 256 # 540 MB #nx, ny, nz = 544, 544, 544 # 5527 MB #nx, ny, nz = 512, 512, 512 # 4608 MB #nx, ny, nz = 480, 480, 480 # 3796 MB nx, ny, nz = 800, 256, 256 # 576 MB #nx, ny, nz = 128, 128, 128 # 72 MB coeff_use = 'e' precision_float = 'single' # instances gpu_devices = common_gpu.gpu_device_list(print_info=False) context = cl.Context(gpu_devices) device = gpu_devices[0] qtask = cpu.QueueTask() fields = Fields(context, device, qtask, nx, ny, nz, coeff_use, precision_float) Core(fields) tmax = 250 if is_plot else 1000 if rank == 0: direction = '+' elif rank == size - 1: direction = '-' else: direction = '+-' #exch = node.ExchangeMpiNonBlock(fields, direction) #exch = node.ExchangeMpiBufferBlock(fields, direction) #exch = node.ExchangeMpiBufferBlockSplit(fields, direction)
def runTest(self):
nx, ny, nz = self.args
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
# buffer instance
nodef.append_buffer_fields(cpu.Fields(3, ny, nz, mpi_type='x-'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, nz, mpi_type='y+'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, nz, mpi_type='y-'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, ny, mpi_type='z+'))
nodef.append_buffer_fields(cpu.Fields(3, nodef.nx, ny, mpi_type='z-'))
exchange = NodeExchange(nodef)
# generate random source
for f in mainf_list[:-1]:
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for f in nodef.cpuf_dict.values():
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
# verify
exchange.update_e()
exchange.update_h()
getf0, getf1 = {}, {}
# mainf list
self.gpu, self.cpu = gpu, cpu
for f0, f1 in zip(mainf_list[:-1], mainf_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, 0, 0), (f0.nx-1, f0.ny-2, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ey', 'ez'], \
(0, 0, 0), (0, f1.ny-2, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hy', 'hz'], \
(f0.nx-1, 1, 1), (f0.nx-1, f0.ny-1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hy', 'hz'], \
(0, 1, 1), (0, f1.ny-1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm(getf0[eh].get_fields() -
getf1[eh].get_fields())
self.assertEqual(norm, 0, '%s, %g, %s, %s, %s' % \
(self.args, norm, 'mainf', \
getf0[eh].mainf.device_type, getf1[eh].mainf.device_type) )
# buffer 'x-'
f0, f1 = nodef.cpuf_dict['x-'], mainf_list[0]
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, 0, 0), (f0.nx-1, f0.ny-2, f0.nz-2))
getf1['e'] = gpu.GetFields(f1, ['ey', 'ez'], \
(1, 0, 0), (1, f1.ny-2, f1.nz-2))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, 1, 1), (f0.nx-2, f0.ny-1, f0.nz-1))
getf1['h'] = gpu.GetFields(f1, ['hy', 'hz'], \
(0, 1, 1), (0, f1.ny-1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'x-', eh))
# buffer 'y+'
anx_list = nodef.accum_nx_list
f1 = nodef.cpuf_dict['y+']
for f0, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ex', 'ez'], \
(0, f0.ny-1, 0), (f0.nx-2, f0.ny-1, f0.nz-2))
getf1['e'] = cpu.GetFields(f1, ['ey', 'ez'], \
(1, anx0, 0), (1, anx1-1, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hx', 'hz'], \
(1, f0.ny-2, 1), (f0.nx-1, f0.ny-2, f0.nz-1))
getf1['h'] = cpu.GetFields(f1, ['hy', 'hz'], \
(0, anx0+1, 1), (0, anx1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y+', eh))
# buffer 'y-'
f0 = nodef.cpuf_dict['y-']
for f1, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, anx0, 0), (f0.nx-1, anx1-1, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ex', 'ez'], \
(0, 1, 0), (f1.nx-2, 1, f1.nz-2))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, anx0+1, 1), (f0.nx-2, anx1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hx', 'hz'], \
(1, 0, 1), (f1.nx-1, 0, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y-', eh))
# buffer 'z+'
f1 = nodef.cpuf_dict['z+']
for f0, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ex', 'ey'], \
(0, 0, f0.nz-1), (f0.nx-2, f0.ny-2, f0.nz-1))
getf1['e'] = cpu.GetFields(f1, ['ey', 'ez'], \
(1, anx0, 0), (1, anx1-1, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hx', 'hy'], \
(1, 1, f0.nz-2), (f0.nx-1, f0.ny-1, f0.nz-2))
getf1['h'] = cpu.GetFields(f1, ['hy', 'hz'], \
(0, anx0+1, 1), (0, anx1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'z+', eh))
# buffer 'z-'
f0 = nodef.cpuf_dict['z-']
for f1, anx0, anx1 in zip(mainf_list, anx_list[:-1], anx_list[1:]):
getf0['e'] = cpu.GetFields(f0, ['ey', 'ez'], \
(f0.nx-1, anx0, 0), (f0.nx-1, anx1-1, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ex', 'ey'], \
(0, 0, 1), (f1.nx-2, f1.ny-2, 1))
getf0['h'] = cpu.GetFields(f0, ['hy', 'hz'], \
(f0.nx-2, anx0+1, 1), (f0.nx-2, anx1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hx', 'hy'], \
(1, 1, 0), (f1.nx-1, f1.ny-1, 0))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'z-', eh))
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, coeff_use,
precision_float)
core = Core(fields)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ['ex', 'ey', 'ez', 'hx', 'hy', 'hz']
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype, ufunc)
fields.set_eh_bufs(*ehs)
ces, chs = common_update.generate_random_cs(coeff_use, nx, ny, nz,
dtype)
if 'e' in coeff_use:
fields.set_ce_bufs(*ces)
if 'h' in coeff_use:
fields.set_ch_bufs(*chs)
tmpf = np.zeros(fields.ns_pitch, dtype=dtype)
# update
if ufunc == 'e':
for tstep in xrange(0, tmax):
fields.update_e()
common_update.update_e(ehs, ces)
for strf, eh in zip(strf_list, ehs)[:3]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slice_z])
max_diff = np.abs(eh - tmpf[:, :, fields.slice_z]).max()
self.assertEqual(
norm, 0,
'%s, %s, %g, %g' % (self.args, strf, norm, max_diff))
if fields.pad != 0:
if strf == 'ez':
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad:])
else:
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad - 1:])
self.assertEqual(
norm2, 0,
'%s, %s, %g, padding' % (self.args, strf, norm2))
elif ufunc == 'h':
for tstep in xrange(0, tmax):
fields.update_h()
common_update.update_h(ehs, chs)
for strf, eh in zip(strf_list, ehs)[3:]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slice_z])
max_diff = np.abs(eh - tmpf[:, :, fields.slice_z]).max()
self.assertEqual(
norm, 0,
'%s, %s, %g, %g' % (self.args, strf, norm, max_diff))
if fields.pad != 0:
if strf == 'hz':
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad:])
else:
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad:])
self.assertEqual(
norm2, 0,
'%s, %s, %g, padding' % (self.args, strf, norm2))
def runTest(self):
axis, nx, ny, nz = self.args
self.gpu, self.cpu = gpu, cpu
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) \
for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
pbc = NodePbc(nodef, axis)
exchange = NodeExchange(nodef)
# generate random source
for f in mainf_list[:-1]:
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for f in nodef.cpuf_dict.values():
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
# verify
for mainf in mainf_list:
mainf.update_e()
pbc.update_e()
exchange.update_e()
for mainf in mainf_list:
mainf.update_h()
pbc.update_h()
exchange.update_h()
mainf_list[-1].enqueue_barrier()
getf0, getf1 = {}, {}
if axis == 'x':
f0, f1 = mainf_list[0], mainf_list[-1]
getf0['e'] = getattr(self, f0.device_type).GetFields(f0, ['ey', 'ez'], \
(0, 0, 0), (0, f0.ny-2, f0.nz-2))
getf1['e'] = getattr(self, f1.device_type).GetFields(f1, ['ey', 'ez'], \
(f1.nx-1, 0, 0), (f1.nx-1, f1.ny-2, f1.nz-2))
getf0['h'] = getattr(self, f0.device_type).GetFields(f0, ['hy', 'hz'], \
(0, 1, 1), (0, f0.ny-1, f0.nz-1))
getf1['h'] = getattr(self, f1.device_type).GetFields(f1, ['hy', 'hz'], \
(f1.nx-1, 1, 1), (f1.nx-1, f1.ny-1, f1.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm(getf0[eh].get_fields() -
getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'x', eh))
elif axis == 'y':
for f in mainf_list:
getf0['e'] = getattr(self, f.device_type).GetFields(f, ['ex', 'ez'], \
(0, 0, 0), (f.nx-2, 0, f.nz-2))
getf1['e'] = getattr(self, f.device_type).GetFields(f, ['ex', 'ez'], \
(0, f.ny-1, 0), (f.nx-2, f.ny-1, f.nz-2))
getf0['h'] = getattr(self, f.device_type).GetFields(f, ['hx', 'hz'], \
(1, 0, 1), (f.nx-1, 0, f.nz-1))
getf1['h'] = getattr(self, f.device_type).GetFields(f, ['hx', 'hz'], \
(1, f.ny-1, 1), (f.nx-1, f.ny-1, f.nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(
norm, 0,
'%g, %s, %s, %s' % (norm, 'y', eh, f.device_type))
elif axis == 'z':
for f in mainf_list:
getf0['e'] = getattr(self, f.device_type).GetFields(f, ['ex', 'ey'], \
(0, 0, f.nz-1), (f.nx-2, f.ny-2, f.nz-1))
getf1['e'] = getattr(self, f.device_type).GetFields(f, ['ex', 'ey'], \
(0, 0, 0), (f.nx-2, f.ny-2, 0))
getf0['h'] = getattr(self, f.device_type).GetFields(f, ['hx', 'hy'], \
(1, 1, f.nz-1), (f.nx-1, f.ny-1, f.nz-1))
getf1['h'] = getattr(self, f.device_type).GetFields(f, ['hx', 'hy'], \
(1, 1, 0), (f.nx-1, f.ny-1, 0))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'z', eh))
def test_y_pbc_x_exchange(self):
# instance
nx, ny, nz = 40, 50, 60
#nx, ny, nz = 3, 4, 5
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
gpuf = gpu.Fields(context, gpu_devices[0], nx, ny, nz)
cpuf = cpu.Fields(nx, ny, nz)
mainf_list = [gpuf, cpuf]
nodef = NodeFields(mainf_list)
core = NodeCore(nodef)
pbc = NodePbc(nodef, 'y')
exchange = NodeExchange(nodef)
# generate random source
ehs_gpu = common_update.generate_random_ehs(nx, ny, nz, nodef.dtype)
gpuf.set_eh_bufs(*ehs_gpu)
ehs_gpu_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs_gpu) )
ehs_cpu = common_update.generate_random_ehs(nx, ny, nz, nodef.dtype)
cpuf.set_ehs(*ehs_cpu)
ehs_cpu_dict = dict( zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs_cpu) )
# verify
for mainf in mainf_list:
mainf.update_e()
pbc.update_e()
exchange.update_e()
for mainf in mainf_list:
mainf.update_h()
pbc.update_h()
exchange.update_h()
mainf_list[-1].enqueue_barrier()
getf0, getf1 = {}, {}
# x-axis exchange
getf0['e'] = gpu.GetFields(gpuf, ['ey', 'ez'], (nx-1, 0, 0), (nx-1, ny-2, nz-2))
getf1['e'] = cpu.GetFields(cpuf, ['ey', 'ez'], (0, 0, 0), (0, ny-2, nz-2))
getf0['h'] = gpu.GetFields(gpuf, ['hy', 'hz'], (nx-1, 1, 1), (nx-1, ny-1, nz-1))
getf1['h'] = cpu.GetFields(cpuf, ['hy', 'hz'], (0, 1, 1), (0, ny-1, nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'x-axis exchange', eh))
# y-axis pbc gpu
getf0['e'] = gpu.GetFields(gpuf, ['ex', 'ez'], (0, ny-1, 0), (nx-2, ny-1, nz-2))
getf1['e'] = gpu.GetFields(gpuf, ['ex', 'ez'], (0, 0, 0), (nx-2, 0, nz-2))
getf0['h'] = gpu.GetFields(gpuf, ['hx', 'hz'], (1, ny-1, 1), (nx-1, ny-1, nz-1))
getf1['h'] = gpu.GetFields(gpuf, ['hx', 'hz'], (1, 0, 1), (nx-1, 0, nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y-axis pbc gpu', eh))
# y-axis pbc cpu
getf0['e'] = cpu.GetFields(cpuf, ['ex', 'ez'], (0, ny-1, 0), (nx-2, ny-1, nz-2))
getf1['e'] = cpu.GetFields(cpuf, ['ex', 'ez'], (0, 0, 0), (nx-2, 0, nz-2))
getf0['h'] = cpu.GetFields(cpuf, ['hx', 'hz'], (1, ny-1, 1), (nx-1, ny-1, nz-1))
getf1['h'] = cpu.GetFields(cpuf, ['hx', 'hz'], (1, 0, 1), (nx-1, 0, nz-1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, 'y-axis pbc cpu', eh))
def runTest(self):
nx, ny, nz = self.args
# instances
buffer_dict = {}
buffer_dict['x+'] = cpu.BufferFields('x+', ny, nz, '', 'single')
buffer_dict['x-'] = cpu.BufferFields('x-', ny, nz, '', 'single')
import pyopencl as cl
from kemp.fdtd3d.util import common_gpu
from kemp.fdtd3d import gpu
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [ gpu.Fields(context, gpu_devices[0], nx, ny, nz) ]
#mainf_list = [ cpu.Fields(nx, ny, nz) ]
nodef = node.Fields(mainf_list, buffer_dict)
# generate random source
dtype = nodef.dtype
ehs = common_random.generate_ehs(nx, ny, nz, dtype)
buf_ehs_p = common_random.generate_ehs(3, ny, nz, dtype)
buf_ehs_m = common_random.generate_ehs(3, ny, nz, dtype)
nodef.mainf_list[0].set_eh_bufs(*ehs)
#nodef.mainf_list[0].set_ehs(*ehs)
nodef.buffer_dict['x+'].set_ehs(*buf_ehs_p)
nodef.buffer_dict['x-'].set_ehs(*buf_ehs_m)
node.Core(nodef)
# allocations for verify
getf_dict = {'x+': {}, 'x-': {}}
getf_buf_dict = {'x+': {}, 'x-': {}}
getf_dict['x+']['e'] = gpu.GetFields(nodef.mainf_list[0], ['ey', 'ez'], (nx-1, 0, 0), (nx-1, ny-1, nz-1))
getf_dict['x+']['h'] = gpu.GetFields(nodef.mainf_list[0], ['hy', 'hz'], (nx-2, 0, 0), (nx-2, ny-1, nz-1))
getf_buf_dict['x+']['e'] = cpu.GetFields(nodef.buffer_dict['x+'], ['ey', 'ez'], (1, 0, 0), (1, ny-1, nz-1))
getf_buf_dict['x+']['h'] = cpu.GetFields(nodef.buffer_dict['x+'], ['hy', 'hz'], (0, 0, 0), (0, ny-1, nz-1))
getf_dict['x-']['e'] = gpu.GetFields(nodef.mainf_list[0], ['ey', 'ez'], (1, 0, 0), (1, ny-1, nz-1))
getf_dict['x-']['h'] = gpu.GetFields(nodef.mainf_list[0], ['hy', 'hz'], (0, 0, 0), (0, ny-1, nz-1))
getf_buf_dict['x-']['e'] = cpu.GetFields(nodef.buffer_dict['x-'], ['ey', 'ez'], (2, 0, 0), (2, ny-1, nz-1))
getf_buf_dict['x-']['h'] = cpu.GetFields(nodef.buffer_dict['x-'], ['hy', 'hz'], (1, 0, 0), (1, ny-1, nz-1))
# verify
nodef.update_e()
nodef.update_h()
print 'nodef, instance_list', nodef.instance_list
print 'mainf_list[0], instance_list', nodef.mainf_list[0].instance_list
for direction in ['x+', 'x-']:
for e_or_h in ['e', 'h']:
getf = getf_dict[direction][e_or_h]
getf_buf = getf_buf_dict[direction][e_or_h]
getf.get_event().wait()
getf_buf.get_event().wait()
original = getf.get_fields()
copy = getf_buf.get_fields()
norm = np.linalg.norm(original - copy)
self.assertEqual(norm, 0, '%s, %g, %s, %s' % (self.args, norm, direction, e_or_h))
def runTest(self):
ufunc, nx, ny, nz, coeff_use, precision_float, tmax = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, coeff_use, precision_float)
core = Core(fields)
# allocations
ns = fields.ns
dtype = fields.dtype
strf_list = ["ex", "ey", "ez", "hx", "hy", "hz"]
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype, ufunc)
fields.set_eh_bufs(*ehs)
ces, chs = common_update.generate_random_cs(coeff_use, nx, ny, nz, dtype)
if "e" in coeff_use:
fields.set_ce_bufs(*ces)
if "h" in coeff_use:
fields.set_ch_bufs(*chs)
tmpf = np.zeros(fields.ns_pitch, dtype=dtype)
# update
if ufunc == "e":
for tstep in xrange(0, tmax):
fields.update_e()
common_update.update_e(ehs, ces)
for strf, eh in zip(strf_list, ehs)[:3]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slice_z])
max_diff = np.abs(eh - tmpf[:, :, fields.slice_z]).max()
self.assertEqual(norm, 0, "%s, %s, %g, %g" % (self.args, strf, norm, max_diff))
if fields.pad != 0:
if strf == "ez":
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad :])
else:
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad - 1 :])
self.assertEqual(norm2, 0, "%s, %s, %g, padding" % (self.args, strf, norm2))
elif ufunc == "h":
for tstep in xrange(0, tmax):
fields.update_h()
common_update.update_h(ehs, chs)
for strf, eh in zip(strf_list, ehs)[3:]:
cl.enqueue_copy(fields.queue, tmpf, fields.get_buf(strf))
norm = np.linalg.norm(eh - tmpf[:, :, fields.slice_z])
max_diff = np.abs(eh - tmpf[:, :, fields.slice_z]).max()
self.assertEqual(norm, 0, "%s, %s, %g, %g" % (self.args, strf, norm, max_diff))
if fields.pad != 0:
if strf == "hz":
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad :])
else:
norm2 = np.linalg.norm(tmpf[:, :, -fields.pad :])
self.assertEqual(norm2, 0, "%s, %s, %g, padding" % (self.args, strf, norm2))
def __init__(self,
geometry_h5_path,
max_tstep,
mpi_shape,
pbc_axes='',
target_device='all',
precision_float='single',
**kargs):
"""
"""
common.check_type('geometry_h5_path', geometry_h5_path, str)
common.check_type('max_tstep', max_tstep, int)
common.check_type('mpi_shape', mpi_shape, (list, tuple), int)
common.check_type('pbc_axes', pbc_axes, str)
common.check_type('target_device', target_device, str)
common.check_value('precision_float', precision_float,
['single', 'double'])
# import modules
global is_mpi, is_gpu
is_mpi = False if mpi_shape == (1, 1, 1) else True
if is_mpi:
global network, common_mpi, comm, size, rank, coord
from mpi4py import MPI
from kemp.fdtd3d import network
from kemp.fdtd3d.util import common_mpi
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
coord = common_mpi.my_coord(rank, mpi_shape)
is_master = False if is_mpi and rank != 0 else True
is_cpu = True if target_device == 'all' or 'cpu' in target_device else False
is_gpu = True if target_device == 'all' or 'gpu' in target_device else False
if is_mpi:
if reduce(lambda a, b: a * b, mpi_shape) != size:
if is_master:
print("The MPI size %d is not matched the mpi_shape %s" %
(size, mpi_shape))
sys.exit()
if is_gpu:
try:
global cl, gpu, common_gpu
import pyopencl as cl
from kemp.fdtd3d import gpu
from kemp.fdtd3d.util import common_gpu
except:
if is_master:
print("The 'pyopencl' module is not found.")
if is_cpu:
if is_master:
print("The CPU is only used.")
target_device = 'cpu'
is_gpu = False
else:
sys.exit()
# read from the h5 file
try:
h5f = h5py.File(geometry_h5_path, 'r')
coeff_use = h5f.attrs['coeff_use']
nx = h5f.attrs['nx']
ny = h5f.attrs['ny']
nz = h5f.attrs['nz']
except:
if is_master:
print(repr(sys.exc_info()))
print("To load the geometry HDF5 file '%s' is failed." %
geometry_h5_path)
sys.exit()
# local variables
device_nx_list = kargs['device_nx_list'] if kargs.has_key(
'device_nx_list') else None
ny_list = kargs['ny_list'] if kargs.has_key('ny_list') else None
nz_list = kargs['nz_list'] if kargs.has_key('nz_list') else None
# Set the number of device and the device_n_list
ndev = 1 if is_cpu else 0
if is_gpu:
try:
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
ndev += len(gpu_devices)
except Exception as errinst:
if is_master:
print(repr(sys.exc_info()))
print(
"To get the GPU devices is failed. The CPU is only used."
)
target_device = 'cpu'
is_gpu = False
if is_mpi:
mi, mj, mk = coord
dnx_list = device_nx_list[mi * ndev:(mi + 1) * ndev]
dny = ny_list[mj]
dnz = nz_list[mk]
else:
dnx_list = device_nx_list
dny = ny_list[0]
dnz = nz_list[0]
total_ndev = mpi_shape[0] * ndev
if len(device_nx_list) != total_ndev:
if is_master:
print(
"The device_nx_list %s is not matched with the number of total devices %d."
% (device_nx_list, total_ndev))
sys.exit()
# create the mainf_list and the buffer_dict
buffer_dict = {}
if is_mpi:
# create BufferFields instances
snx = sum(dnx_list) - ndev + 1
sny, snz = dny, dnz
mpi_target_dict = common_mpi.mpi_target_dict(
rank, mpi_shape, pbc_axes)
for direction, target_rank in mpi_target_dict.items():
if target_rank != None:
n0, n1 = {
'x': (sny, snz),
'y': (snx, snz),
'z': (snx, sny)
}[direction[0]]
bufferf = cpu.BufferFields(direction, target_rank, n0, n1,
coeff_use, precision_float)
buffer_dict[direction] = bufferf
#network.ExchangeMpi(bufferf, target_rank, max_tstep)
#network.ExchangeMpiNoSplitBlock(bufferf, target_rank)
#network.ExchangeMpiBlock(bufferf, target_rank)
mainf_list = []
if is_cpu:
mainf_list += [
cpu.Fields(dnx_list.pop(0),
dny,
dnz,
coeff_use,
precision_float,
use_cpu_core=1)
]
if is_gpu:
mainf_list += [
gpu.Fields(context, gpu_device, dnx, dny, dnz, coeff_use,
precision_float)
for gpu_device, dnx in zip(gpu_devices, dnx_list)
]
# create node.Fields instance
nodef = node.Fields(mainf_list, buffer_dict)
# create nodePbc instance
node_pbc_axes = ''.join([
axis for i, axis in enumerate(['x', 'y', 'z'])
if mpi_shape[i] == 1 and axis in pbc_axes
])
if node_pbc_axes != '':
node.Pbc(nodef, node_pbc_axes)
# create update instances
node.Core(nodef)
for bufferf in nodef.buffer_dict.values():
#network.ExchangeMpiSplitBlock(bufferf)
network.ExchangeMpiSplitNonBlock(bufferf, max_tstep)
'''
if rank == 0:
direction = 'x+'
target_rank = 1
elif rank == 1:
direction = 'x-'
target_rank = 0
#network.ExchangeMpiNoBufferBlock(nodef, target_rank, direction) # no buffer, block
self.mpi_instance_list = []
self.mpi_instance_list.append( network.ExchangeMpiNoBufferNonBlock(nodef, target_rank, direction) )
'''
# accum_sub_ns_dict, node_pts
if is_mpi:
asn_dict = common_mpi.accum_sub_ns_dict(mpi_shape, ndev,
device_nx_list, ny_list,
nz_list)
axes = ['x', 'y', 'z']
node_pt0 = [asn_dict[ax][m] for ax, m in zip(axes, coord)]
node_pt1 = [asn_dict[ax][m + 1] - 1 for ax, m in zip(axes, coord)]
# global variables
self.max_tstep = max_tstep
self.mpi_shape = mpi_shape
#self.ns = (nx, ny, nz)
self.ns = (asn_dict['x'][-1], asn_dict['y'][-1],
asn_dict['z'][-1]) if is_mpi else nodef.ns
self.nodef = nodef
self.is_master = is_master
if is_mpi:
self.asn_dict = asn_dict
self.node_pt0 = node_pt0
self.node_pt1 = node_pt1
# for savefields
self.savef_tag_list = []
self.savef_list = []
def __init__(self, geometry_h5_path, max_tstep, mpi_shape, pbc_axes='', target_device='all', precision_float='single', **kargs):
"""
"""
common.check_type('geometry_h5_path', geometry_h5_path, str)
common.check_type('max_tstep', max_tstep, int)
common.check_type('mpi_shape', mpi_shape, (list, tuple), int)
common.check_type('pbc_axes', pbc_axes, str)
common.check_type('target_device', target_device, str)
common.check_value('precision_float', precision_float, ['single', 'double'])
# import modules
global is_mpi, is_gpu
is_mpi = False if mpi_shape == (1, 1, 1) else True
if is_mpi:
global network, common_mpi, comm, size, rank, coord
from mpi4py import MPI
from kemp.fdtd3d import network
from kemp.fdtd3d.util import common_mpi
comm = MPI.COMM_WORLD
size = comm.Get_size()
rank = comm.Get_rank()
coord = common_mpi.my_coord(rank, mpi_shape)
is_master = False if is_mpi and rank != 0 else True
is_cpu = True if target_device == 'all' or 'cpu' in target_device else False
is_gpu = True if target_device == 'all' or 'gpu' in target_device else False
if is_mpi:
if reduce(lambda a,b:a*b, mpi_shape) != size:
if is_master:
print("The MPI size %d is not matched the mpi_shape %s" % (size, mpi_shape) )
sys.exit()
if is_gpu:
try:
global cl, gpu, common_gpu
import pyopencl as cl
from kemp.fdtd3d import gpu
from kemp.fdtd3d.util import common_gpu
except:
if is_master:
print("The 'pyopencl' module is not found.")
if is_cpu:
if is_master:
print("The CPU is only used.")
target_device = 'cpu'
is_gpu = False
else:
sys.exit()
# read from the h5 file
try:
h5f = h5py.File(geometry_h5_path, 'r')
coeff_use = h5f.attrs['coeff_use']
nx = h5f.attrs['nx']
ny = h5f.attrs['ny']
nz = h5f.attrs['nz']
except:
if is_master:
print( repr(sys.exc_info()) )
print("To load the geometry HDF5 file '%s' is failed." % geometry_h5_path)
sys.exit()
# local variables
device_nx_list = kargs['device_nx_list'] if kargs.has_key('device_nx_list') else None
ny_list = kargs['ny_list'] if kargs.has_key('ny_list') else None
nz_list = kargs['nz_list'] if kargs.has_key('nz_list') else None
# Set the number of device and the device_n_list
ndev = 1 if is_cpu else 0
if is_gpu:
try:
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
ndev += len(gpu_devices)
except Exception as errinst:
if is_master:
print( repr(sys.exc_info()) )
print("To get the GPU devices is failed. The CPU is only used.")
target_device = 'cpu'
is_gpu = False
if is_mpi:
mi, mj, mk = coord
dnx_list = device_nx_list[mi*ndev:(mi+1)*ndev]
dny = ny_list[mj]
dnz = nz_list[mk]
else:
dnx_list = device_nx_list
dny = ny_list[0]
dnz = nz_list[0]
total_ndev = mpi_shape[0] * ndev
if len(device_nx_list) != total_ndev:
if is_master:
print("The device_nx_list %s is not matched with the number of total devices %d." % (device_nx_list, total_ndev) )
sys.exit()
# create the mainf_list and the buffer_dict
buffer_dict = {}
if is_mpi:
# create BufferFields instances
snx = sum(dnx_list) - ndev + 1
sny, snz = dny, dnz
mpi_target_dict = common_mpi.mpi_target_dict(rank, mpi_shape, pbc_axes)
for direction, target_rank in mpi_target_dict.items():
if target_rank != None:
n0, n1 = {'x': (sny, snz), 'y': (snx, snz), 'z': (snx, sny)}[direction[0]]
bufferf = cpu.BufferFields(direction, target_rank, n0, n1, coeff_use, precision_float)
buffer_dict[direction] = bufferf
#network.ExchangeMpi(bufferf, target_rank, max_tstep)
#network.ExchangeMpiNoSplitBlock(bufferf, target_rank)
#network.ExchangeMpiBlock(bufferf, target_rank)
mainf_list = []
if is_cpu:
mainf_list += [cpu.Fields(dnx_list.pop(0), dny, dnz, coeff_use, precision_float, use_cpu_core=1)]
if is_gpu:
mainf_list += [gpu.Fields(context, gpu_device, dnx, dny, dnz, coeff_use, precision_float) for gpu_device, dnx in zip(gpu_devices, dnx_list)]
# create node.Fields instance
nodef = node.Fields(mainf_list, buffer_dict)
# create nodePbc instance
node_pbc_axes = ''.join([axis for i, axis in enumerate(['x', 'y', 'z']) if mpi_shape[i] == 1 and axis in pbc_axes])
if node_pbc_axes != '':
node.Pbc(nodef, node_pbc_axes)
# create update instances
node.Core(nodef)
for bufferf in nodef.buffer_dict.values():
#network.ExchangeMpiSplitBlock(bufferf)
network.ExchangeMpiSplitNonBlock(bufferf, max_tstep)
'''
if rank == 0:
direction = 'x+'
target_rank = 1
elif rank == 1:
direction = 'x-'
target_rank = 0
#network.ExchangeMpiNoBufferBlock(nodef, target_rank, direction) # no buffer, block
self.mpi_instance_list = []
self.mpi_instance_list.append( network.ExchangeMpiNoBufferNonBlock(nodef, target_rank, direction) )
'''
# accum_sub_ns_dict, node_pts
if is_mpi:
asn_dict = common_mpi.accum_sub_ns_dict(mpi_shape, ndev, device_nx_list, ny_list, nz_list)
axes = ['x', 'y', 'z']
node_pt0 = [asn_dict[ax][m] for ax, m in zip(axes, coord)]
node_pt1 = [asn_dict[ax][m+1] - 1 for ax, m in zip(axes, coord)]
# global variables
self.max_tstep = max_tstep
self.mpi_shape = mpi_shape
#self.ns = (nx, ny, nz)
self.ns = (asn_dict['x'][-1], asn_dict['y'][-1], asn_dict['z'][-1]) if is_mpi else nodef.ns
self.nodef = nodef
self.is_master = is_master
if is_mpi:
self.asn_dict = asn_dict
self.node_pt0 = node_pt0
self.node_pt1 = node_pt1
# for savefields
self.savef_tag_list = []
self.savef_list = []
def test_y_pbc_x_exchange(self):
# instance
nx, ny, nz = 40, 50, 60
#nx, ny, nz = 3, 4, 5
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
gpuf = gpu.Fields(context, gpu_devices[0], nx, ny, nz)
cpuf = cpu.Fields(nx, ny, nz)
mainf_list = [gpuf, cpuf]
nodef = NodeFields(mainf_list)
core = NodeCore(nodef)
pbc = NodePbc(nodef, 'y')
exchange = NodeExchange(nodef)
# generate random source
ehs_gpu = common_update.generate_random_ehs(nx, ny, nz, nodef.dtype)
gpuf.set_eh_bufs(*ehs_gpu)
ehs_gpu_dict = dict(zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs_gpu))
ehs_cpu = common_update.generate_random_ehs(nx, ny, nz, nodef.dtype)
cpuf.set_ehs(*ehs_cpu)
ehs_cpu_dict = dict(zip(['ex', 'ey', 'ez', 'hx', 'hy', 'hz'], ehs_cpu))
# verify
for mainf in mainf_list:
mainf.update_e()
pbc.update_e()
exchange.update_e()
for mainf in mainf_list:
mainf.update_h()
pbc.update_h()
exchange.update_h()
mainf_list[-1].enqueue_barrier()
getf0, getf1 = {}, {}
# x-axis exchange
getf0['e'] = gpu.GetFields(gpuf, ['ey', 'ez'], (nx - 1, 0, 0),
(nx - 1, ny - 2, nz - 2))
getf1['e'] = cpu.GetFields(cpuf, ['ey', 'ez'], (0, 0, 0),
(0, ny - 2, nz - 2))
getf0['h'] = gpu.GetFields(gpuf, ['hy', 'hz'], (nx - 1, 1, 1),
(nx - 1, ny - 1, nz - 1))
getf1['h'] = cpu.GetFields(cpuf, ['hy', 'hz'], (0, 1, 1),
(0, ny - 1, nz - 1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0,
'%g, %s, %s' % (norm, 'x-axis exchange', eh))
# y-axis pbc gpu
getf0['e'] = gpu.GetFields(gpuf, ['ex', 'ez'], (0, ny - 1, 0),
(nx - 2, ny - 1, nz - 2))
getf1['e'] = gpu.GetFields(gpuf, ['ex', 'ez'], (0, 0, 0),
(nx - 2, 0, nz - 2))
getf0['h'] = gpu.GetFields(gpuf, ['hx', 'hz'], (1, ny - 1, 1),
(nx - 1, ny - 1, nz - 1))
getf1['h'] = gpu.GetFields(gpuf, ['hx', 'hz'], (1, 0, 1),
(nx - 1, 0, nz - 1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0,
'%g, %s, %s' % (norm, 'y-axis pbc gpu', eh))
# y-axis pbc cpu
getf0['e'] = cpu.GetFields(cpuf, ['ex', 'ez'], (0, ny - 1, 0),
(nx - 2, ny - 1, nz - 2))
getf1['e'] = cpu.GetFields(cpuf, ['ex', 'ez'], (0, 0, 0),
(nx - 2, 0, nz - 2))
getf0['h'] = cpu.GetFields(cpuf, ['hx', 'hz'], (1, ny - 1, 1),
(nx - 1, ny - 1, nz - 1))
getf1['h'] = cpu.GetFields(cpuf, ['hx', 'hz'], (1, 0, 1),
(nx - 1, 0, nz - 1))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
g0 = getf0[eh].get_fields()
g1 = getf1[eh].get_fields()
norm = np.linalg.norm(g0 - g1)
self.assertEqual(norm, 0,
'%g, %s, %s' % (norm, 'y-axis pbc cpu', eh))
def runTest(self):
axis, nx, ny, nz = self.args
self.gpu, self.cpu = gpu, cpu
# instance
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [gpu.Fields(context, device, nx, ny, nz) for device in gpu_devices]
mainf_list.append(cpu.Fields(nx, ny, nz))
nodef = NodeFields(mainf_list)
dtype = nodef.dtype
pbc = NodePbc(nodef, axis)
exchange = NodeExchange(nodef)
# generate random source
for f in mainf_list[:-1]:
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_eh_bufs(*ehs)
for f in nodef.cpuf_dict.values():
nx, ny, nz = f.ns
ehs = common_update.generate_random_ehs(nx, ny, nz, dtype)
f.set_ehs(*ehs)
# verify
for mainf in mainf_list:
mainf.update_e()
pbc.update_e()
exchange.update_e()
for mainf in mainf_list:
mainf.update_h()
pbc.update_h()
exchange.update_h()
mainf_list[-1].enqueue_barrier()
getf0, getf1 = {}, {}
if axis == "x":
f0, f1 = mainf_list[0], mainf_list[-1]
getf0["e"] = getattr(self, f0.device_type).GetFields(f0, ["ey", "ez"], (0, 0, 0), (0, f0.ny - 2, f0.nz - 2))
getf1["e"] = getattr(self, f1.device_type).GetFields(
f1, ["ey", "ez"], (f1.nx - 1, 0, 0), (f1.nx - 1, f1.ny - 2, f1.nz - 2)
)
getf0["h"] = getattr(self, f0.device_type).GetFields(f0, ["hy", "hz"], (0, 1, 1), (0, f0.ny - 1, f0.nz - 1))
getf1["h"] = getattr(self, f1.device_type).GetFields(
f1, ["hy", "hz"], (f1.nx - 1, 1, 1), (f1.nx - 1, f1.ny - 1, f1.nz - 1)
)
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ["e", "h"]:
norm = np.linalg.norm(getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, "%g, %s, %s" % (norm, "x", eh))
elif axis == "y":
for f in mainf_list:
getf0["e"] = getattr(self, f.device_type).GetFields(f, ["ex", "ez"], (0, 0, 0), (f.nx - 2, 0, f.nz - 2))
getf1["e"] = getattr(self, f.device_type).GetFields(
f, ["ex", "ez"], (0, f.ny - 1, 0), (f.nx - 2, f.ny - 1, f.nz - 2)
)
getf0["h"] = getattr(self, f.device_type).GetFields(f, ["hx", "hz"], (1, 0, 1), (f.nx - 1, 0, f.nz - 1))
getf1["h"] = getattr(self, f.device_type).GetFields(
f, ["hx", "hz"], (1, f.ny - 1, 1), (f.nx - 1, f.ny - 1, f.nz - 1)
)
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ["e", "h"]:
norm = np.linalg.norm(getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, "%g, %s, %s, %s" % (norm, "y", eh, f.device_type))
elif axis == "z":
for f in mainf_list:
getf0["e"] = getattr(self, f.device_type).GetFields(
f, ["ex", "ey"], (0, 0, f.nz - 1), (f.nx - 2, f.ny - 2, f.nz - 1)
)
getf1["e"] = getattr(self, f.device_type).GetFields(f, ["ex", "ey"], (0, 0, 0), (f.nx - 2, f.ny - 2, 0))
getf0["h"] = getattr(self, f.device_type).GetFields(
f, ["hx", "hy"], (1, 1, f.nz - 1), (f.nx - 1, f.ny - 1, f.nz - 1)
)
getf1["h"] = getattr(self, f.device_type).GetFields(f, ["hx", "hy"], (1, 1, 0), (f.nx - 1, f.ny - 1, 0))
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ["e", "h"]:
norm = np.linalg.norm(getf0[eh].get_fields() - getf1[eh].get_fields())
self.assertEqual(norm, 0, "%g, %s, %s" % (norm, "z", eh))
def runTest(self):
nx, ny, nz = self.args
tmax = 10
# instances
buffer_dict = {}
if rank == 0: buffer_dict['x+'] = cpu.BufferFields('x+', ny, nz, '', 'single')
elif rank == 1: buffer_dict['x-'] = cpu.BufferFields('x-', ny, nz, '', 'single')
import pyopencl as cl
from kemp.fdtd3d.util import common_gpu
from kemp.fdtd3d import gpu
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
mainf_list = [ gpu.Fields(context, gpu_devices[0], nx, ny, nz) ]
#mainf_list = [ cpu.Fields(nx, ny, nz, use_cpu_core=1) ]
nodef = node.Fields(mainf_list, buffer_dict)
# generate random source
dtype = nodef.dtype
ehs = common_random.generate_ehs(nx, ny, nz, dtype)
buf_ehs = common_random.generate_ehs(3, ny, nz, dtype)
#nodef.cpuf.set_ehs(*ehs)
nodef.mainf_list[0].set_eh_bufs(*ehs)
other = {0: 1, 1: 0}[rank]
if rank == 0:
#nodef.buffer_dict['x+'].set_ehs(*buf_ehs)
ExchangeMpi(nodef.buffer_dict['x+'], other, tmax)
elif rank == 1:
#nodef.buffer_dict['x-'].set_ehs(*buf_ehs)
ExchangeMpi(nodef.buffer_dict['x-'], other, tmax)
node.Core(nodef)
# allocations for verify
if rank == 0:
getf_e = cpu.GetFields(nodef.buffer_dict['x+'], ['ey', 'ez'], (2, 0, 0), (2, ny-1, nz-1))
getf_h = cpu.GetFields(nodef.buffer_dict['x+'], ['hy', 'hz'], (1, 0, 0), (1, ny-1, nz-1))
elif rank == 1:
getf_e = cpu.GetFields(nodef.buffer_dict['x-'], ['ey', 'ez'], (1, 0, 0), (1, ny-1, nz-1))
getf_h = cpu.GetFields(nodef.buffer_dict['x-'], ['hy', 'hz'], (0, 0, 0), (0, ny-1, nz-1))
# verify
print 'nodef, instance_list', rank, nodef.instance_list
print 'f0, instance_list', rank, nodef.mainf_list[0].instance_list
exch = nodef.instance_list[0]
main_core = nodef.mainf_list[0].instance_list[0]
if rank == 0:
#nodef.buffer_dict['x+'].instance_list.pop(0)
print 'bufferf x+, instance_list', rank, nodef.buffer_dict['x+'].instance_list
core, mpi = nodef.buffer_dict['x+'].instance_list
elif rank == 1:
#nodef.buffer_dict['x-'].instance_list.pop(0)
print 'bufferf x-, instance_list', rank, nodef.buffer_dict['x-'].instance_list
core, mpi = nodef.buffer_dict['x-'].instance_list
for tstep in xrange(1, tmax+1):
#if rank == 0: print 'tstep', tstep
#nodef.update_e()
main_core.update_e()
if rank == 0:
#print tstep, rank, 'core upE'
core.update_e('')
#print tstep, rank, 'mpi upE'
mpi.update_e('')
elif rank == 1:
#print tstep, rank, 'core upE pre'
core.update_e('pre')
#print tstep, rank, 'mpi upE pre'
mpi.update_e('pre')
#print tstep, rank, 'core upE post'
core.update_e('post')
#print tstep, rank, 'mpi upE post'
mpi.update_e('post')
exch.update_e()
# verify the buffer
#print tstep, rank, 'pre get'
getf_h.get_event().wait()
#print tstep, rank, 'after get'
if rank == 1:
#print tstep, rank, 'pre save'
np.save('rank1_h_%d' % tstep, getf_h.get_fields())
#print tstep, rank, 'after save'
elif rank == 0:
no_exist_npy = True
while no_exist_npy:
try:
arr1 = np.load('rank1_h_%d.npy' % tstep)
no_exist_npy = False
except:
sleep(0.5)
arr0 = getf_h.get_fields()
#print tstep, 'h arr0\n', arr0
#print tstep, 'h arr1\n', arr1
norm = np.linalg.norm(arr0 - arr1)
if norm != 0: print tstep, 'h norm', norm
#if tstep > 1: self.assertEqual(norm, 0, '%s, %g, h' % (self.args, norm))
#nodef.update_h()
main_core.update_h()
if rank == 0:
#print tstep, rank, 'core upH pre'
core.update_h('pre')
#print tstep, rank, 'mpi upH pre'
mpi.update_h('pre')
#print tstep, rank, 'core upH post'
core.update_h('post')
#print tstep, rank, 'mpi upH post'
mpi.update_h('post')
elif rank == 1:
#print tstep, rank, 'core upH'
core.update_h('')
#print tstep, rank, 'mpi upH'
mpi.update_h('')
exch.update_h()
getf_e.get_event().wait()
if rank == 1:
np.save('rank1_e_%d' % tstep, getf_e.get_fields())
elif rank == 0:
no_exist_npy = True
while no_exist_npy:
try:
arr1 = np.load('rank1_e_%d.npy' % tstep)
no_exist_npy = False
except:
sleep(0.5)
arr0 = getf_e.get_fields()
norm = np.linalg.norm(arr0 - arr1)
if norm != 0: print tstep, 'e norm', norm
#self.assertEqual(norm, 0, '%s, %g, e' % (self.args, norm))
'''
is_plot = False #nx, ny, nz = 240, 256, 256 # 540 MB #nx, ny, nz = 544, 544, 544 # 5527 MB #nx, ny, nz = 512, 512, 512 # 4608 MB #nx, ny, nz = 480, 480, 480 # 3796 MB nx, ny, nz = 800, 256, 256 # 576 MB #nx, ny, nz = 128, 128, 128 # 72 MB coeff_use = 'e' precision_float = 'single' # instances gpu_devices = common_gpu.gpu_device_list(print_info=False) context = cl.Context(gpu_devices) device = gpu_devices[0] qtask = cpu.QueueTask() fields = Fields(context, device, qtask, nx, ny, nz, coeff_use, precision_float) Core(fields) tmax = 250 if is_plot else 1000 if rank == 0: direction = '+' elif rank == size - 1: direction = '-' else: direction = '+-' #exch = node.ExchangeMpiNonBlock(fields, direction) #exch = node.ExchangeMpiBufferBlock(fields, direction) #exch = node.ExchangeMpiBufferBlockSplit(fields, direction)
def runTest(self):
axis, nx, ny, nz, precision_float = self.args
gpu_devices = common_gpu.gpu_device_list(print_info=False)
context = cl.Context(gpu_devices)
device = gpu_devices[0]
fields = Fields(context, device, nx, ny, nz, '', precision_float)
pbc = Pbc(fields, axis)
# allocations
ehs = common_update.generate_random_ehs(nx, ny, nz, fields.dtype)
fields.set_eh_bufs(*ehs)
# update
fields.update_e()
fields.update_h()
# verify
getf0, getf1 = {}, {}
strfs_e = {
'x': ['ey', 'ez'],
'y': ['ex', 'ez'],
'z': ['ex', 'ey']
}[axis]
strfs_h = {
'x': ['hy', 'hz'],
'y': ['hx', 'hz'],
'z': ['hx', 'hy']
}[axis]
pt0 = (0, 0, 0)
pt1 = { 'x': (0, ny-2, nz-2), \
'y': (nx-2, 0, nz-2), \
'z': (nx-2, ny-2, 0) }[axis]
getf0['e'] = GetFields(fields, strfs_e, pt0, pt1)
pt0 = { 'x': (nx-1, 0, 0), \
'y': (0, ny-1, 0), \
'z': (0, 0, nz-1) }[axis]
pt1 = { 'x': (nx-1, ny-2, nz-2), \
'y': (nx-2, ny-1, nz-2), \
'z': (nx-2, ny-2, nz-1) }[axis]
getf1['e'] = GetFields(fields, strfs_e, pt0, pt1)
pt0 = { 'x': (0, 1, 1), \
'y': (1, 0, 1), \
'z': (1, 1, 0) }[axis]
pt1 = { 'x': (0, ny-1, nz-1), \
'y': (nx-1, 0, nz-1), \
'z': (nx-1, ny-1, 0) }[axis]
getf0['h'] = GetFields(fields, strfs_h, pt0, pt1)
pt0 = { 'x': (nx-1, 1, 1), \
'y': (1, ny-1, 1), \
'z': (1, 1, nz-1) }[axis]
pt1 = (nx - 1, ny - 1, nz - 1)
getf1['h'] = GetFields(fields, strfs_h, pt0, pt1)
for getf in getf0.values() + getf1.values():
getf.get_event().wait()
for eh in ['e', 'h']:
norm = np.linalg.norm( \
getf0[eh].get_fields() - getf1[eh].get_fields() )
self.assertEqual(norm, 0, '%g, %s, %s' % (norm, self.args, eh))
