Python ProteinCore.gdumpの例

コード例 #1

ファイル: sandbox.py プロジェクト: CMD-Oxford/MichelaNGLo-protein-module

def compress(taxid=9606, target='../gpickle'):
    if not os.path.exists(target):
        os.mkdir(target)
    source = os.path.join(global_settings.pickle_folder, f'taxid{taxid}')
    for pf in os.listdir(source):
        p = ProteinCore().load(file=os.path.join(source, pf))
        p.gdump(file=os.path.join(target, os.path.splitext(pf)[0] + '.gzp'))

コード例 #2

def compress(
    taxid=9606,
    target='/home/matteo/Coding/Michelanglo/MichelaNGLo-human-protein-data/gpickle'
):
    if not os.path.exists(target):
        os.mkdir(target)
    source = os.path.join(global_settings.pickle_folder, f'taxid{taxid}')
    for pf in os.listdir(source):
        p = ProteinCore().load(file=os.path.join(source, pf))
        p.gdump(file=os.path.join(target, os.path.splitext(pf)[0] + '.gzp'))