コード例 #1
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_russellrao(self):
     reference = cdist(self.Xb1, self.Xb2, metric='russellrao')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='russellrao')
     eq(reference, testing)
コード例 #2
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_sokalsneath(self):
     reference = cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     eq(reference, testing)
コード例 #3
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 def test_mahalanobis_2(self):
     VI = np.random.randn(self.Xd1.shape[0], self.Xd1.shape[0])
     reference = cdist(self.Xd1, self.Xd2, metric='mahalanobis', VI=VI)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='mahalanobis', VI=VI)
     npt.assert_array_equal(reference, testing)
コード例 #4
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_dice(self):
     reference = cdist(self.Xb1, self.Xb2, metric='dice')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='dice')
     eq(reference, testing)
コード例 #5
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 def test_canberra(self):
     reference = cdist(self.Xd1, self.Xd2, metric='canberra')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='canberra')
     npt.assert_array_equal(reference, testing)
コード例 #6
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 def test_dice(self):
     reference = cdist(self.Xb1, self.Xb2, metric='dice')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='dice')
     npt.assert_array_equal(reference, testing)
コード例 #7
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 def test_hamming_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='hamming')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='hamming')
     npt.assert_array_equal(reference, testing)
コード例 #8
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 def test_sqeuclidean(self):
     reference = cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     npt.assert_array_equal(reference, testing)
コード例 #9
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 def test_sqeuclidean(self):
     reference = cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     npt.assert_array_equal(reference, testing)
コード例 #10
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 def test_chebychev(self):
     reference = cdist(self.Xd1, self.Xd2, metric='chebychev')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='chebychev')
     npt.assert_array_equal(reference, testing)
コード例 #11
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 def test_correlation(self):
     reference = cdist(self.Xd1, self.Xd2, metric='correlation')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='correlation')
     npt.assert_array_equal(reference, testing)
コード例 #12
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 def test_cityblock(self):
     reference = cdist(self.Xd1, self.Xd2, metric='cityblock')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='cityblock')
     npt.assert_array_equal(reference, testing)
コード例 #13
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 def test_minkowski(self):
     p = np.random.randint(10)
     reference = cdist(self.Xd1, self.Xd2, metric='minkowski', p=p)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='minkowski', p=p)
     npt.assert_array_equal(reference, testing)
コード例 #14
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 def test_mahalanobis_2(self):
     VI = np.random.randn(self.Xd1.shape[0], self.Xd1.shape[0])
     reference = cdist(self.Xd1, self.Xd2, metric='mahalanobis', VI=VI)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='mahalanobis', VI=VI)
     npt.assert_array_equal(reference, testing)
コード例 #15
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 def test_jaccard_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='jaccard')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='jaccard')
     npt.assert_array_equal(reference, testing)
コード例 #16
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 def test_cityblock(self):
     reference = cdist(self.Xd1, self.Xd2, metric='cityblock')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='cityblock')
     npt.assert_array_equal(reference, testing)
コード例 #17
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 def test_canberra(self):
     reference = cdist(self.Xd1, self.Xd2, metric='canberra')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='canberra')
     npt.assert_array_equal(reference, testing)
コード例 #18
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 def test_hamming_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='hamming')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='hamming')
     npt.assert_array_equal(reference, testing)
コード例 #19
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 def test_braycurtis(self):
     reference = cdist(self.Xd1, self.Xd2, metric='braycurtis')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='braycurtis')
     npt.assert_array_equal(reference, testing)
コード例 #20
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 def test_matching(self):
     reference = cdist(self.Xb1, self.Xb2, metric='matching')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='matching')
     npt.assert_array_equal(reference, testing)
コード例 #21
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 def test_matching(self):
     reference = cdist(self.Xb1, self.Xb2, metric='matching')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='matching')
     npt.assert_array_equal(reference, testing)
コード例 #22
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 def test_russellrao(self):
     reference = cdist(self.Xb1, self.Xb2, metric='russellrao')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='russellrao')
     npt.assert_array_equal(reference, testing)
コード例 #23
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 def test_kulsinski(self):
     reference = cdist(self.Xb1, self.Xb2, metric='kulsinski')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='kulsinski')
     npt.assert_array_equal(reference, testing)
コード例 #24
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_kulsinski(self):
     reference = cdist(self.Xb1, self.Xb2, metric='kulsinski')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='kulsinski')
     eq(reference, testing)
コード例 #25
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 def test_dice(self):
     reference = cdist(self.Xb1, self.Xb2, metric='dice')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='dice')
     npt.assert_array_equal(reference, testing)
コード例 #26
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_rogerstanimoto(self):
     reference = cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     eq(reference, testing)
コード例 #27
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 def test_rogerstanimoto(self):
     reference = cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     npt.assert_array_equal(reference, testing)
コード例 #28
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_sokalmichener(self):
     reference = cdist(self.Xb1, self.Xb2, metric='sokalmichener')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='sokalmichener')
     eq(reference, testing)
コード例 #29
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 def test_russellrao(self):
     reference = cdist(self.Xb1, self.Xb2, metric='russellrao')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='russellrao')
     npt.assert_array_equal(reference, testing)
コード例 #30
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 def test_seuclidean_2(self):
     V = np.random.randn(self.Xd1.shape[1])
     reference = cdist(self.Xd1, self.Xd2, metric='seuclidean', V=V)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='seuclidean', V=V)
     npt.assert_array_equal(reference, testing)
コード例 #31
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 def test_sokalsneath(self):
     reference = cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     npt.assert_array_equal(reference, testing)
コード例 #32
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 def test_minkowski(self):
     p = np.random.randint(10)
     reference = cdist(self.Xd1, self.Xd2, metric='minkowski', p=p)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='minkowski', p=p)
     npt.assert_array_equal(reference, testing)
コード例 #33
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_sqeuclidean(self):
     reference = cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='sqeuclidean')
     eq(reference, testing)
コード例 #34
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 def test_correlation(self):
     reference = cdist(self.Xd1, self.Xd2, metric='correlation')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='correlation')
     npt.assert_array_equal(reference, testing)
コード例 #35
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_chebychev(self):
     reference = cdist(self.Xd1, self.Xd2, metric='chebychev')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='chebychev')
     eq(reference, testing)
コード例 #36
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 def test_chebychev(self):
     reference = cdist(self.Xd1, self.Xd2, metric='chebychev')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='chebychev')
     npt.assert_array_equal(reference, testing)
コード例 #37
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_hamming_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='hamming')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='hamming')
     eq(reference, testing)
コード例 #38
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 def test_jaccard_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='jaccard')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='jaccard')
     npt.assert_array_equal(reference, testing)
コード例 #39
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_jaccard_2(self):
     reference = cdist(self.Xb1, self.Xb2, metric='jaccard')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='jaccard')
     eq(reference, testing)
コード例 #40
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 def test_braycurtis(self):
     reference = cdist(self.Xd1, self.Xd2, metric='braycurtis')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='braycurtis')
     npt.assert_array_equal(reference, testing)
コード例 #41
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_canberra(self):
     reference = cdist(self.Xd1, self.Xd2, metric='canberra')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='canberra')
     eq(reference, testing)
コード例 #42
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 def test_kulsinski(self):
     reference = cdist(self.Xb1, self.Xb2, metric='kulsinski')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='kulsinski')
     npt.assert_array_equal(reference, testing)
コード例 #43
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_braycurtis(self):
     reference = cdist(self.Xd1, self.Xd2, metric='braycurtis')
     testing = fast_cdist(self.Xd1, self.Xd2, metric='braycurtis')
     eq(reference, testing)
コード例 #44
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 def test_rogerstanimoto(self):
     reference = cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='rogerstanimoto')
     npt.assert_array_equal(reference, testing)
コード例 #45
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ファイル: test_metrics.py プロジェクト: dvanatta/msmbuilder 
 def test_matching(self):
     reference = cdist(self.Xb1, self.Xb2, metric='matching')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='matching')
     eq(reference, testing)
コード例 #46
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 def test_sokalsneath(self):
     reference = cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     testing = fast_cdist(self.Xb1, self.Xb2, metric='sokalsneath')
     npt.assert_array_equal(reference, testing)
コード例 #47
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 def test_seuclidean_2(self):
     V = np.random.randn(self.Xd1.shape[1])
     reference = cdist(self.Xd1, self.Xd2, metric='seuclidean', V=V)
     testing = fast_cdist(self.Xd1, self.Xd2, metric='seuclidean', V=V)
     npt.assert_array_equal(reference, testing)