def __init__(self, channels, kernel_size, strides=(1, 1),
padding=(0, 0), dilation=(1, 1), activation=None,
weight_initializer=None, in_channels=0, _norm_type = 'BatchNorm', axis =1 ,**kwards):
HybridBlock.__init__(self,**kwards)
if (_norm_type == 'BatchNorm'):
self.norm = gluon.nn.BatchNorm
elif (_norm_type == 'SyncBatchNorm'):
self.norm = gluon.contrib.nn.SyncBatchNorm
_prefix = "_SyncBN"
elif (_norm_type == 'InstanceNorm'):
self.norm = gluon.nn.InstanceNorm
elif (_norm_type == 'LayerNorm'):
self.norm = gluon.nn.LayerNorm
else:
raise NotImplementedError
with self.name_scope():
self.conv2d = gluon.nn.Conv2D(channels, kernel_size = kernel_size,
strides= strides,
padding=padding,
dilation= dilation,
activation=activation,
use_bias=False,
weight_initializer = weight_initializer,
in_channels=0)
self.norm_layer = self.norm(axis=axis)
def __init__(self,
nfilters,
nheads=1,
_norm_type='BatchNorm',
norm_groups=None,
ftdepth=5,
**kwards):
HybridBlock.__init__(self, **kwards)
with self.name_scope():
self.conv1 = Conv2DNormed(channels=nfilters,
kernel_size=3,
padding=1,
groups=nheads,
_norm_type=_norm_type,
norm_groups=norm_groups,
**kwards) # restore help
self.conv3 = Fusion(nfilters=nfilters,
kernel_size=3,
padding=1,
nheads=nheads,
norm=_norm_type,
norm_groups=norm_groups,
ftdepth=ftdepth,
**kwards) # process
def __init__(self, _nfilters, _norm_type='BatchNorm', **kwards):
HybridBlock.__init__(self, **kwards)
self.nfilters = _nfilters
# This is used as a container (list) of layers
self.convs = gluon.nn.HybridSequential()
with self.name_scope():
self.convs.add(
Conv2DNormed(self.nfilters // 4,
kernel_size=(1, 1),
padding=(0, 0),
prefix="_conv1_"))
self.convs.add(
Conv2DNormed(self.nfilters // 4,
kernel_size=(1, 1),
padding=(0, 0),
prefix="_conv2_"))
self.convs.add(
Conv2DNormed(self.nfilters // 4,
kernel_size=(1, 1),
padding=(0, 0),
prefix="_conv3_"))
self.convs.add(
Conv2DNormed(self.nfilters // 4,
kernel_size=(1, 1),
padding=(0, 0),
prefix="_conv4_"))
self.conv_norm_final = Conv2DNormed(channels=self.nfilters,
kernel_size=(1, 1),
padding=(0, 0),
_norm_type=_norm_type)
def __init__(self,
num_init_features,
growth_rate,
block_config,
reduction,
bn_size,
downsample,
initial_layers="imagenet",
dropout=0,
classes=1000,
dilated=False,
config_string="DIDIDIDITDIDIDIDIDITDIDIDIDITDIDIDIDI",
**kwargs):
HybridBlock.__init__(self, **kwargs)
self.num_blocks = len(block_config)
self.dilation = (1, 1, 2, 4) if dilated else (1, 1, 1, 1)
self.downsample_struct = downsample
self.bn_size = bn_size
self.growth_rate = growth_rate
self.dropout = dropout
self.reduction_rates = reduction
self.config_string = config_string
if block_config is not [-1, -1, -1, -1]:
warnings.warn(
"Attention, the MeliusNetCustom block_config constructor parameter is not [-1,-1,-1,-1]."
" This parameter only exists for backward compatibility but isn't used anymore"
" because the configuration is read from the config_string. Make sure you understand how the"
" MeliusNetCustom class should be used.")
with self.name_scope():
self.features = nn.HybridSequential(prefix='')
add_initial_layers(initial_layers, self.features,
num_init_features)
# Add dense blocks
self.num_features = num_init_features
if self.config_string.count("T") != 3:
raise Exception(
"config_string must contain exactly 3 tansition layers")
self.meliusnet_block_configs = self.config_string.split('T')
for i, block_string in enumerate(self.meliusnet_block_configs):
self._make_repeated_base_blocks(block_string, i)
if i != len(block_config) - 1:
self._make_transition(i)
self.finalize = nn.HybridSequential(prefix='')
self.finalize.add(nn.BatchNorm())
self.finalize.add(nn.Activation('relu'))
if dilated:
self.finalize.add(nn.AvgPool2D(pool_size=28))
else:
self.finalize.add(
nn.AvgPool2D(
pool_size=4 if initial_layers == "thumbnail" else 7))
self.finalize.add(nn.Flatten())
self.output = nn.Dense(classes)
def print_summary(net: gluon.HybridBlock, ipt_shape=(1, 3, 416, 416)):
ctx = net.collect_params().list_ctx()[0]
ipt = mx.random.uniform(shape=ipt_shape, ctx=ctx)
net.summary(ipt)
table = compute_net_params(net)
logging.info("Parameter Statistics\n" + table.table)
if wandb.run:
headers = table.table_data[0]
data = table.table_data[1:]
wandb_table = wandb.Table(columns=headers, data=data)
wandb.log({"Parameters Statistics": wandb_table}, commit=False)
def __init__(self, _nfilters, _norm_type='BatchNorm', **kwards):
HybridBlock.__init__(self, **kwards)
with self.name_scope():
# This performs convolution, no BatchNormalization. No need for bias.
self.up = UpSample(_nfilters, _norm_type=_norm_type)
self.conv_normed = Conv2DNormed(channels=_nfilters,
kernel_size=(1, 1),
padding=(0, 0),
_norm_type=_norm_type)
def __init__(self,_nfilters, factor = 2, _norm_type='BatchNorm', **kwards):
HybridBlock.__init__(self,**kwards)
self.factor = factor
self.nfilters = _nfilters // self.factor
with self.name_scope():
self.convup_normed = Conv2DNormed(self.nfilters,
kernel_size = (1,1),
_norm_type = _norm_type,
prefix="_convdn_")
def __init__(self,
nfilters,
factor=2,
_norm_type='BatchNorm',
norm_groups=None,
**kwards):
HybridBlock.__init__(self, **kwards)
self.factor = factor
self.nfilters = nfilters // self.factor
self.convup_normed = Conv2DNormed(self.nfilters,
kernel_size=(1, 1),
_norm_type=_norm_type,
norm_groups=norm_groups)
def create_predictor(self, transformation: Transformation,
trained_network: HybridBlock) -> Predictor:
prediction_network = GaussianProcessPredictionNetwork(
prediction_length=self.prediction_length,
context_length=self.context_length,
cardinality=self.cardinality,
num_samples=self.num_eval_samples,
params=trained_network.collect_params(),
kernel_output=self.kernel_output,
params_scaling=self.params_scaling,
ctx=self.trainer.ctx,
float_type=self.float_type,
max_iter_jitter=self.max_iter_jitter,
jitter_method=self.jitter_method,
sample_noise=self.sample_noise,
)
copy_parameters(net_source=trained_network,
net_dest=prediction_network)
return RepresentableBlockPredictor(
input_transform=transformation,
prediction_net=prediction_network,
batch_size=self.trainer.batch_size,
freq=self.freq,
prediction_length=self.prediction_length,
ctx=self.trainer.ctx,
float_type=self.float_type,
)
def create_predictor(self, transformation: Transformation,
trained_network: HybridBlock) -> Predictor:
prediction_splitter = self._create_instance_splitter("test")
prediction_network = NBEATSPredictionNetwork(
prediction_length=self.prediction_length,
context_length=self.context_length,
num_stacks=self.num_stacks,
widths=self.widths,
num_blocks=self.num_blocks,
num_block_layers=self.num_block_layers,
expansion_coefficient_lengths=self.expansion_coefficient_lengths,
sharing=self.sharing,
stack_types=self.stack_types,
params=trained_network.collect_params(),
scale=self.scale,
)
return RepresentableBlockPredictor(
input_transform=transformation + prediction_splitter,
prediction_net=prediction_network,
batch_size=self.batch_size,
freq=self.freq,
prediction_length=self.prediction_length,
ctx=self.trainer.ctx,
)
def create_predictor(
self, transformation: Transformation, trained_network: HybridBlock
) -> Predictor:
prediction_network = DeepStatePredictionNetwork(
num_sample_paths=self.num_sample_paths,
num_layers=self.num_layers,
num_cells=self.num_cells,
cell_type=self.cell_type,
past_length=self.past_length,
prediction_length=self.prediction_length,
issm=self.issm,
dropout_rate=self.dropout_rate,
cardinality=self.cardinality,
embedding_dimension=self.embedding_dimension,
scaling=self.scaling,
params=trained_network.collect_params(),
)
copy_parameters(trained_network, prediction_network)
return RepresentableBlockPredictor(
input_transform=transformation,
prediction_net=prediction_network,
batch_size=self.trainer.batch_size,
freq=self.freq,
prediction_length=self.prediction_length,
ctx=self.trainer.ctx,
)
def create_predictor(self, transformation: Transformation,
trained_network: HybridBlock) -> Predictor:
prediction_splitter = self._create_instance_splitter("test")
prediction_network = DeepStatePredictionNetwork(
num_layers=self.num_layers,
num_cells=self.num_cells,
cell_type=self.cell_type,
past_length=self.past_length,
prediction_length=self.prediction_length,
issm=self.issm,
dropout_rate=self.dropout_rate,
cardinality=self.cardinality,
embedding_dimension=self.embedding_dimension,
scaling=self.scaling,
num_parallel_samples=self.num_parallel_samples,
noise_std_bounds=self.noise_std_bounds,
prior_cov_bounds=self.prior_cov_bounds,
innovation_bounds=self.innovation_bounds,
params=trained_network.collect_params(),
)
copy_parameters(trained_network, prediction_network)
return RepresentableBlockPredictor(
input_transform=transformation + prediction_splitter,
prediction_net=prediction_network,
batch_size=self.batch_size,
freq=self.freq,
prediction_length=self.prediction_length,
ctx=self.trainer.ctx,
)
def export_mxnet(model: gluon.HybridBlock,
sample_input: List[mx.ndarray.NDArray]):
model.hybridize()
model(*sample_input)
directory = "build"
if os.path.exists(directory) and os.path.isdir(directory):
shutil.rmtree(directory)
os.mkdir(directory)
model_path = os.path.join(directory, "mxmodel")
# Create and stored the model
model.export(model_path)
zip_files(directory, model_path)
# Start creating template
array = [ndarray_to_numpy(x) for x in sample_input]
dest = get_djl_template("mxmodel.zip", array, add_deps())
shutil.copy(model_path + ".zip", dest)
def __init__(self, nn: HybridBlock, freq: int):
"""
:param nn: Model to plot parameters of.
:param freq: Plotting frequency.
"""
self._params = nn.collect_params()
self._freq = freq
self._last_call = 0
def __init__(self,
_nfilters,
_kernel_size=(3, 3),
_dilation_rate=(1, 1),
_norm_type='BatchNorm',
**kwards):
HybridBlock.__init__(self, **kwards)
self.nfilters = _nfilters
self.kernel_size = _kernel_size
self.dilation_rate = _dilation_rate
if (_norm_type == 'BatchNorm'):
self.norm = gluon.nn.BatchNorm
_prefix = "_BN"
elif (_norm_type == 'InstanceNorm'):
self.norm = gluon.nn.InstanceNorm
_prefix = "_IN"
elif (norm_type == 'LayerNorm'):
self.norm = gluon.nn.LayerNorm
_prefix = "_LN"
else:
raise NotImplementedError
with self.name_scope():
# Ensures padding = 'SAME' for ODD kernel selection
p0 = self.dilation_rate[0] * (self.kernel_size[0] - 1) / 2
p1 = self.dilation_rate[1] * (self.kernel_size[1] - 1) / 2
p = (int(p0), int(p1))
self.BN1 = self.norm(axis=1, prefix=_prefix + "1_")
self.conv1 = gluon.nn.Conv2D(self.nfilters,
kernel_size=self.kernel_size,
padding=p,
dilation=self.dilation_rate,
use_bias=False,
prefix="_conv1_")
self.BN2 = self.norm(axis=1, prefix=_prefix + "2_")
self.conv2 = gluon.nn.Conv2D(self.nfilters,
kernel_size=self.kernel_size,
padding=p,
dilation=self.dilation_rate,
use_bias=True,
prefix="_conv2_")
def build_optimizer(cfg: dict, net: gluon.HybridBlock):
lrs = build_lr_scheduler(cfg.pop('lr_scheduler', None))
cfg['optimizer_params']['lr_scheduler'] = lrs
net.backbone.collect_params().setattr('lr_mult',
cfg.pop('backbone_lr_mult', 1.0))
net.backbone.collect_params().setattr('wd_mult',
cfg.pop('backbone_wd_mult', 1.0))
if cfg.pop('no_wd', False):
net.collect_params('.*beta|.*gamma|.*bias').setattr('wd_mult', 0.0)
opt = cfg.pop('type', 'sgd')
optimizer_params = cfg.pop('optimizer_params', {})
if amp._amp_initialized:
cfg['update_on_kvstore'] = False
trainer = gluon.Trainer(net.collect_params(),
opt,
optimizer_params=optimizer_params,
**cfg)
if amp._amp_initialized:
amp.init_trainer(trainer)
return trainer
def __init__(self,_nfilters, _factor=2, _norm_type='BatchNorm', **kwards):
HybridBlock.__init__(self, **kwards)
# Double the size of filters, since you will downscale by 2.
self.factor = _factor
self.nfilters = _nfilters * self.factor
# I was using a kernel size of 1x1, this is notthing to do with max pooling, or selecting the most dominant number. Now changing that.
# There is bug somewhere, if I use kernel_size = 2, code crashes with memory-illegal access.
# Am not sure it is my bug, or something mxnet related
# Kernel = 3, padding = 1 works fine, no bug here in latest version of mxnet.
self.kernel_size = (3,3)
self.strides = (2,2)
self.pad = (1,1)
with self.name_scope():
self.convdn = gluon.nn.Conv2D(self.nfilters,
kernel_size=self.kernel_size,
strides=self.strides,
padding = self.pad,
use_bias=False,
prefix="_convdn_")
def create_predictor(self, transformation: Transformation,
trained_network: HybridBlock) -> Predictor:
prediction_network = SimpleFeedForwardPredictionNetwork(
num_hidden_dimensions=self.num_hidden_dimensions,
prediction_length=self.prediction_length,
context_length=self.context_length,
distr_output=self.distr_output,
batch_normalization=self.batch_normalization,
mean_scaling=self.mean_scaling,
params=trained_network.collect_params(),
num_parallel_samples=self.num_parallel_samples,
)
return RepresentableBlockPredictor(
input_transform=transformation,
prediction_net=prediction_network,
batch_size=self.trainer.batch_size,
freq=self.freq,
prediction_length=self.prediction_length,
ctx=self.trainer.ctx,
)
def __init__(self, name: str, model: gluon.HybridBlock,
input_shapes: List[List[int]]):
self._name = name
self._sym = self._get_onnx_sym(model, len(input_shapes))
self._param_dict = model.collect_params()
self._input_shapes = input_shapes
def forward(self, x):
self.layer_shape = x.shape
return HybridBlock.forward(self, x)
def forward(self, x, t1_indices, t0_indices):
self.input_shape = x.shape[0]
return HybridBlock.forward(self, x, t1_indices, t0_indices)
def create_training_network(self) -> HybridBlock:
return HybridBlock()
def __init__(self,
_nfilters_init,
_NClasses,
verbose=True,
_norm_type='BatchNorm',
**kwards):
HybridBlock.__init__(self, **kwards)
self.model_name = "ResUNet_d7_cmtskc"
self.depth = 7
self.nfilters = _nfilters_init # Initial number of filters
self.NClasses = _NClasses
with self.name_scope():
self.encoder = ResUNet_d7_encoder(self.nfilters,
self.NClasses,
_norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 1)
if verbose:
print("depth:= {0}, nfilters: {1}".format(7, nfilters))
self.UpComb1 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv1 = ResNet_v2_unit(nfilters, _norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 2)
if verbose:
print("depth:= {0}, nfilters: {1}".format(8, nfilters))
self.UpComb2 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv2 = ResNet_atrous_2_unit(nfilters,
_norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 3)
if verbose:
print("depth:= {0}, nfilters: {1}".format(9, nfilters))
self.UpComb3 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv3 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 4)
if verbose:
print("depth:= {0}, nfilters: {1}".format(10, nfilters))
self.UpComb4 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv4 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 5)
if verbose:
print("depth:= {0}, nfilters: {1}".format(11, nfilters))
self.UpComb5 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv5 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
nfilters = self.nfilters * 2**(self.depth - 1 - 6)
if verbose:
print("depth:= {0}, nfilters: {1}".format(12, nfilters))
self.UpComb6 = combine_layers(nfilters, _norm_type=_norm_type)
self.UpConv6 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
self.psp_2ndlast = PSP_Pooling(self.nfilters,
_norm_type=_norm_type)
# Segmenetation logits -- deeper for better reconstruction
self.logits = gluon.nn.HybridSequential()
self.logits.add(
Conv2DNormed(channels=self.nfilters,
kernel_size=(3, 3),
padding=(1, 1)))
self.logits.add(gluon.nn.Activation('relu'))
self.logits.add(
Conv2DNormed(channels=self.nfilters,
kernel_size=(3, 3),
padding=(1, 1)))
self.logits.add(gluon.nn.Activation('relu'))
self.logits.add(
gluon.nn.Conv2D(self.NClasses, kernel_size=1, padding=0))
# bound logits
self.bound_logits = gluon.nn.HybridSequential()
self.bound_logits.add(
Conv2DNormed(channels=self.nfilters,
kernel_size=(3, 3),
padding=(1, 1)))
self.bound_logits.add(gluon.nn.Activation('relu'))
self.bound_logits.add(
gluon.nn.Conv2D(self.NClasses, kernel_size=1, padding=0))
# distance logits -- deeper for better reconstruction
self.distance_logits = gluon.nn.HybridSequential()
self.distance_logits.add(
Conv2DNormed(channels=self.nfilters,
kernel_size=(3, 3),
padding=(1, 1)))
self.distance_logits.add(gluon.nn.Activation('relu'))
self.distance_logits.add(
Conv2DNormed(channels=self.nfilters,
kernel_size=(3, 3),
padding=(1, 1)))
self.distance_logits.add(gluon.nn.Activation('relu'))
self.distance_logits.add(
gluon.nn.Conv2D(self.NClasses, kernel_size=1, padding=0))
# This layer is trying to identify the exact coloration on HSV scale (cv2 devined)
self.color_logits = gluon.nn.Conv2D(3, kernel_size=1, padding=0)
# Last activation, customization for binary results
if (self.NClasses == 1):
self.ChannelAct = gluon.nn.HybridLambda(
lambda F, x: F.sigmoid(x))
else:
self.ChannelAct = gluon.nn.HybridLambda(
lambda F, x: F.softmax(x, axis=1))
def save(
name: str,
model: gluon.HybridBlock,
*,
labels: t.Optional[t.Dict[str, str]] = None,
custom_objects: t.Optional[t.Dict[str, t.Any]] = None,
metadata: t.Optional[t.Dict[str, t.Any]] = None,
model_store: "ModelStore" = Provide[BentoMLContainer.model_store],
) -> Tag:
"""
Save a model instance to BentoML modelstore.
Args:
name (:code:`str`):
Name for given model instance. This should pass Python identifier check.
model (`mxnet.gluon.HybridBlock`):
Instance of gluon.HybridBlock model to be saved.
labels (:code:`Dict[str, str]`, `optional`, default to :code:`None`):
user-defined labels for managing models, e.g. team=nlp, stage=dev
custom_objects (:code:`Dict[str, Any]]`, `optional`, default to :code:`None`):
user-defined additional python objects to be saved alongside the model,
e.g. a tokenizer instance, preprocessor function, model configuration json
metadata (:code:`Dict[str, Any]`, `optional`, default to :code:`None`):
Custom metadata for given model.
model_store (:mod:`~bentoml._internal.models.store.ModelStore`, default to :mod:`BentoMLContainer.model_store`):
BentoML modelstore, provided by DI Container.
Returns:
:obj:`~bentoml.Tag`: A :obj:`tag` with a format `name:version` where `name` is the user-defined model's name, and a generated `version` by BentoML.
Examples:
.. code-block:: python
import mxnet
import mxnet.gluon as gluon
import bentoml
def train_gluon_classifier() -> gluon.nn.HybridSequential:
net = mxnet.gluon.nn.HybridSequential()
net.hybridize()
net.forward(mxnet.nd.array(0))
return net
model = train_gluon_classifier()
tag = bentoml.gluon.save("gluon_block", model)
""" # noqa
context: t.Dict[str, t.Any] = {
"framework_name": "gluon",
"pip_dependencies": [f"mxnet=={get_pkg_version('mxnet')}"],
}
options: t.Dict[str, t.Any] = dict()
with bentoml.models.create(
name,
module=MODULE_NAME,
labels=labels,
custom_objects=custom_objects,
options=options,
context=context,
metadata=metadata,
) as _model:
model.export(_model.path_of(SAVE_NAMESPACE))
return _model.tag
def __init__(self,
_nfilters_init,
_NClasses,
verbose=True,
_norm_type='BatchNorm',
**kwards):
HybridBlock.__init__(self, **kwards)
self.model_name = "ResUNet_d6_encoder"
self.depth = 6
self.nfilters = _nfilters_init # Initial number of filters
self.NClasses = _NClasses
with self.name_scope():
# First convolution Layer
# Starting with first convolutions to make the input "channel" dim equal to the number of initial filters
self.conv_first_normed = Conv2DNormed(channels=self.nfilters,
kernel_size=(1, 1),
_norm_type=_norm_type,
prefix="_conv_first_")
# Progressively reducing the dilation_rate of Atrous convolutions (the deeper the smaller).
# Usually 32
nfilters = self.nfilters * 2**(0)
if verbose:
print("depth:= {0}, nfilters: {1}".format(0, nfilters))
self.Dn1 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
self.pool1 = DownSample(nfilters, _norm_type=_norm_type)
# Usually 64
nfilters = self.nfilters * 2**(1)
if verbose:
print("depth:= {0}, nfilters: {1}".format(1, nfilters))
self.Dn2 = ResNet_atrous_unit(nfilters, _norm_type=_norm_type)
self.pool2 = DownSample(nfilters, _norm_type=_norm_type)
# Usually 128
nfilters = self.nfilters * 2**(2)
if verbose:
print("depth:= {0}, nfilters: {1}".format(2, nfilters))
self.Dn3 = ResNet_atrous_2_unit(nfilters, _norm_type=_norm_type)
self.pool3 = DownSample(nfilters, _norm_type=_norm_type)
# Usually 256
nfilters = self.nfilters * 2**(3)
if verbose:
print("depth:= {0}, nfilters: {1}".format(3, nfilters))
self.Dn4 = ResNet_atrous_2_unit(nfilters,
_dilation_rates=[3, 5],
_norm_type=_norm_type)
self.pool4 = DownSample(nfilters, _norm_type=_norm_type)
# Usually 512
nfilters = self.nfilters * 2**(4)
if verbose:
print("depth:= {0}, nfilters: {1}".format(4, nfilters))
self.Dn5 = ResNet_v2_unit(nfilters, _norm_type=_norm_type)
self.pool5 = DownSample(nfilters)
# Usually 1024
nfilters = self.nfilters * 2**(5)
if verbose:
print("depth:= {0}, nfilters: {1}".format(5, nfilters))
self.Dn6 = ResNet_v2_unit(nfilters)
# Same number of filters, with new definition
self.middle = PSP_Pooling(nfilters, _norm_type=_norm_type)