def test_fetch_atlas_msdl(tmp_path, request_mocker):
labels = pd.DataFrame(
{"x": [1.5, 1.2], "y": [1.5, 1.3],
"z": [1.5, 1.4], "name": ["Aud", "DMN"], "net_name": ["Aud", "DMN"]})
root = Path("MSDL_rois")
archive = {root / "msdl_rois_labels.csv": labels.to_csv(index=False),
root / "msdl_rois.nii": "",
root / "README.txt": ""}
request_mocker.url_mapping["*MSDL_rois.zip"] = dict_to_archive(
archive, "zip")
dataset = atlas.fetch_atlas_msdl(data_dir=tmp_path, verbose=0)
assert isinstance(dataset.labels, list)
assert isinstance(dataset.region_coords, list)
assert isinstance(dataset.networks, list)
assert isinstance(dataset.maps, str)
assert request_mocker.url_count == 1
assert dataset.description != ''
def test_fetch_atlas_msdl(tmp_path, request_mocker):
datadir = str(tmp_path / 'msdl_atlas')
os.mkdir(datadir)
os.mkdir(os.path.join(datadir, 'MSDL_rois'))
data_dir = os.path.join(datadir, 'MSDL_rois', 'msdl_rois_labels.csv')
csv = np.rec.array([(1.5, 1.5, 1.5, 'Aud', 'Aud'),
(1.2, 1.3, 1.4, 'DMN', 'DMN')],
dtype=[('x', '<f8'), ('y', '<f8'), ('z', '<f8'),
('name', 'S12'), ('net_name', 'S19')])
with open(data_dir, 'wb') as csv_file:
header = '{0}\n'.format(','.join(csv.dtype.names))
csv_file.write(header.encode())
np.savetxt(csv_file, csv, delimiter=',', fmt='%s')
dataset = atlas.fetch_atlas_msdl(data_dir=str(tmp_path), verbose=0)
assert isinstance(dataset.labels, list)
assert isinstance(dataset.region_coords, list)
assert isinstance(dataset.networks, list)
assert isinstance(dataset.maps, _basestring)
assert len(tst.mock_url_request.urls) == 1
assert dataset.description != ''
def test_fetch_atlas_msdl():
datadir = os.path.join(tst.tmpdir, 'msdl_atlas')
os.mkdir(datadir)
os.mkdir(os.path.join(datadir, 'MSDL_rois'))
data_dir = os.path.join(datadir, 'MSDL_rois', 'msdl_rois_labels.csv')
csv = np.rec.array([(1.5, 1.5, 1.5, 'Aud', 'Aud'),
(1.2, 1.3, 1.4, 'DMN', 'DMN')],
dtype=[('x', '<f8'), ('y', '<f8'),
('z', '<f8'), ('name', 'S12'),
('net_name', 'S19')])
with open(data_dir, 'wb') as csv_file:
header = '{0}\n'.format(','.join(csv.dtype.names))
csv_file.write(header.encode())
np.savetxt(csv_file, csv, delimiter=',', fmt='%s')
dataset = atlas.fetch_atlas_msdl(data_dir=tst.tmpdir, verbose=0)
assert_true(isinstance(dataset.labels, list))
assert_true(isinstance(dataset.region_coords, list))
assert_true(isinstance(dataset.networks, list))
assert_true(isinstance(dataset.maps, _basestring))
assert_equal(len(tst.mock_url_request.urls), 1)
assert_not_equal(dataset.description, '')
def test_fetch_atlas_msdl():
dataset = atlas.fetch_atlas_msdl(data_dir=tst.tmpdir, verbose=0)
assert_true(isinstance(dataset.labels, _basestring))
assert_true(isinstance(dataset.maps, _basestring))
assert_equal(len(tst.mock_url_request.urls), 1)
assert_not_equal(dataset.description, '')
def test_fetch_atlas_msdl():
dataset = atlas.fetch_atlas_msdl(data_dir=tmpdir, verbose=0)
assert_true(isinstance(dataset.labels, _basestring))
assert_true(isinstance(dataset.maps, _basestring))
assert_equal(len(mock_url_request.urls), 1)
