def test_view_connectome():
adj, coord = _make_connectome()
html = html_connectome.view_connectome(adj, coord)
check_html(html, False, 'connectome-plot')
html = html_connectome.view_connectome(adj, coord, '85.3%')
check_html(html, False, 'connectome-plot')
html = html_connectome.view_connectome(adj, coord, '85.3%',
linewidth=8.5, marker_size=4.2)
check_html(html, False, 'connectome-plot')
def test_view_connectome():
adj, coord = _make_connectome()
html = html_connectome.view_connectome(adj, coord)
check_html(html, False, 'connectome-plot')
html = html_connectome.view_connectome(adj, coord, '85.3%')
check_html(html, False, 'connectome-plot')
html = html_connectome.view_connectome(adj,
coord,
'85.3%',
linewidth=8.5,
marker_size=4.2)
check_html(html, False, 'connectome-plot')
def test_view_connectome():
adj, coord = _make_connectome()
html = html_connectome.view_connectome(adj, coord)
check_html(html, False, 'connectome-plot')
html = html_connectome.view_connectome(adj, coord, '85.3%',
title="SOME_TITLE")
check_html(html, False, 'connectome-plot', title="SOME_TITLE")
assert "SOME_TITLE" in html.html
html = html_connectome.view_connectome(adj, coord, '85.3%',
linewidth=8.5, node_size=4.2)
check_html(html, False, 'connectome-plot', title="Connectome plot")
html = html_connectome.view_connectome(
adj, coord, '85.3%', linewidth=8.5, node_size=np.arange(len(coord)))
check_html(html, False, 'connectome-plot')
def test_params_deprecation_view_connectome():
deprecated_params = {
'coords': 'node_coords',
'threshold': 'edge_threshold',
'cmap': 'edge_cmap',
'marker_size': 'node_size',
}
deprecation_msg = (
'The parameter "{}" will be removed in 0.6.0 release of Nilearn. '
'Please use the parameter "{}" instead.')
warning_msgs = {
old_: deprecation_msg.format(old_, new_)
for old_, new_ in deprecated_params.items()
}
adj, coord = _make_connectome()
with warnings.catch_warnings(record=True) as raised_warnings:
html_connectome.view_connectome(
adjacency_matrix=adj,
coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(
adjacency_matrix=adj,
node_coords=coord,
threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(
adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(
adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
marker_size=4.2,
)
html_connectome.view_connectome(
adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(
adj,
coord,
'85.3%',
cm.cyan_orange,
8.5,
4.2,
)
old_params = ['coords', 'threshold', 'cmap', 'marker_size']
assert len(raised_warnings) == 4
for old_param_, raised_warning_ in zip(old_params, raised_warnings):
assert warning_msgs[old_param_] == str(raised_warning_.message)
assert raised_warning_.category is DeprecationWarning
def test_params_deprecation_view_connectome():
deprecated_params = {'coords': 'node_coords',
'threshold': 'edge_threshold',
'cmap': 'edge_cmap',
'marker_size': 'node_size',
}
deprecation_msg = (
'The parameter "{}" will be removed in 0.6.0 release of Nilearn. '
'Please use the parameter "{}" instead.'
)
warning_msgs = {old_: deprecation_msg.format(old_, new_)
for old_, new_ in deprecated_params.items()
}
adj, coord = _make_connectome()
with warnings.catch_warnings(record=True) as raised_warnings:
html_connectome.view_connectome(adjacency_matrix=adj,
coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5, node_size=4.2,
)
html_connectome.view_connectome(adjacency_matrix=adj,
node_coords=coord,
threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
marker_size=4.2,
)
html_connectome.view_connectome(adjacency_matrix=adj,
node_coords=coord,
edge_threshold='85.3%',
edge_cmap=cm.cyan_orange,
linewidth=8.5,
node_size=4.2,
)
html_connectome.view_connectome(adj,
coord,
'85.3%',
cm.cyan_orange,
8.5,
4.2,
)
old_params = ['coords', 'threshold', 'cmap', 'marker_size']
assert len(raised_warnings) == 4
for old_param_, raised_warning_ in zip(old_params, raised_warnings):
assert warning_msgs[old_param_] == str(raised_warning_.message)
assert raised_warning_.category is DeprecationWarning