def test_view_connectome(): adj, coord = _make_connectome() html = html_connectome.view_connectome(adj, coord) check_html(html, False, 'connectome-plot') html = html_connectome.view_connectome(adj, coord, '85.3%') check_html(html, False, 'connectome-plot') html = html_connectome.view_connectome(adj, coord, '85.3%', linewidth=8.5, marker_size=4.2) check_html(html, False, 'connectome-plot')
def test_view_connectome(): adj, coord = _make_connectome() html = html_connectome.view_connectome(adj, coord) check_html(html, False, 'connectome-plot') html = html_connectome.view_connectome(adj, coord, '85.3%', title="SOME_TITLE") check_html(html, False, 'connectome-plot', title="SOME_TITLE") assert "SOME_TITLE" in html.html html = html_connectome.view_connectome(adj, coord, '85.3%', linewidth=8.5, node_size=4.2) check_html(html, False, 'connectome-plot', title="Connectome plot") html = html_connectome.view_connectome( adj, coord, '85.3%', linewidth=8.5, node_size=np.arange(len(coord))) check_html(html, False, 'connectome-plot')
def test_params_deprecation_view_connectome(): deprecated_params = { 'coords': 'node_coords', 'threshold': 'edge_threshold', 'cmap': 'edge_cmap', 'marker_size': 'node_size', } deprecation_msg = ( 'The parameter "{}" will be removed in 0.6.0 release of Nilearn. ' 'Please use the parameter "{}" instead.') warning_msgs = { old_: deprecation_msg.format(old_, new_) for old_, new_ in deprecated_params.items() } adj, coord = _make_connectome() with warnings.catch_warnings(record=True) as raised_warnings: html_connectome.view_connectome( adjacency_matrix=adj, coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome( adjacency_matrix=adj, node_coords=coord, threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome( adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome( adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, marker_size=4.2, ) html_connectome.view_connectome( adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome( adj, coord, '85.3%', cm.cyan_orange, 8.5, 4.2, ) old_params = ['coords', 'threshold', 'cmap', 'marker_size'] assert len(raised_warnings) == 4 for old_param_, raised_warning_ in zip(old_params, raised_warnings): assert warning_msgs[old_param_] == str(raised_warning_.message) assert raised_warning_.category is DeprecationWarning
def test_params_deprecation_view_connectome(): deprecated_params = {'coords': 'node_coords', 'threshold': 'edge_threshold', 'cmap': 'edge_cmap', 'marker_size': 'node_size', } deprecation_msg = ( 'The parameter "{}" will be removed in 0.6.0 release of Nilearn. ' 'Please use the parameter "{}" instead.' ) warning_msgs = {old_: deprecation_msg.format(old_, new_) for old_, new_ in deprecated_params.items() } adj, coord = _make_connectome() with warnings.catch_warnings(record=True) as raised_warnings: html_connectome.view_connectome(adjacency_matrix=adj, coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome(adjacency_matrix=adj, node_coords=coord, threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome(adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome(adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, marker_size=4.2, ) html_connectome.view_connectome(adjacency_matrix=adj, node_coords=coord, edge_threshold='85.3%', edge_cmap=cm.cyan_orange, linewidth=8.5, node_size=4.2, ) html_connectome.view_connectome(adj, coord, '85.3%', cm.cyan_orange, 8.5, 4.2, ) old_params = ['coords', 'threshold', 'cmap', 'marker_size'] assert len(raised_warnings) == 4 for old_param_, raised_warning_ in zip(old_params, raised_warnings): assert warning_msgs[old_param_] == str(raised_warning_.message) assert raised_warning_.category is DeprecationWarning