def __init__(self, game, numData):
self.n = game.n
self.K = game.K
self.K2 = game.K2
self.K3 = game.K3
self.seed = game.seed
self.numData = numData
self.Ntest = 500000
self.lr = 1e-1
self.nepoch = 30
self.nstep = 30
self.lb = -1
self.ub = 1
np.random.seed(self.seed)
torch.manual_seed(self.seed)
self.target = copy.deepcopy(game.f)
self.target.train = True
self.learn_model = NN(game.K, game.K2, game.K3, True)
self.history = np.zeros(4)
self.xTest = torch.randn(self.Ntest, self.n, self.K)
testScore = self.target.forward(self.xTest)
testProb = torch.nn.functional.softmax(testScore, dim=1)
self.yTest = torch.squeeze(torch.multinomial(testProb, 1))
def __init__(self, size=64, gray=False, gen_depth=16):
NN.__init__(self, gray=gray)
# input image size
self.size = size
self.gen_depth = gen_depth
self.G = None
def study_ppal_components(n_training_img, k_ppal_components):
"""
Show the principal components of the NN
:param n_training_img: Number of training images per person to use
:param k_ppal_components: Number of principal components to use in the NN
"""
train_img, train_labels, test_img, test_labels = load_images(
n_training_img)
nearest_neighbor = NN()
nearest_neighbor.train(train_img, train_labels, k_ppal_components)
sqrt = math.sqrt(k_ppal_components)
rows = sqrt if sqrt == int(sqrt) else int(sqrt) + 1
i = 0
for eigenface in nearest_neighbor.eigenfaces:
i += 1
if i > rows * int(sqrt):
break
plt.subplot(int(sqrt), rows, i)
plt.imshow(shape_image(eigenface), cmap="gray")
plt.xticks([])
plt.yticks([])
plt.subplots_adjust(wspace=0, hspace=0)
# plt.suptitle(f'Eigenvectors. {n_training_img} training images, {k_ppal_components} eigenfaces')
# plt.title("Eigenfaces used")
plt.show()
def __init__(self, seed, n, K, K2, K3, target, numData):
self.n = n
self.K = K
self.K2 = K2
self.K3 = K3
self.seed = seed
self.numData = numData
self.Nstrat = self.K
self.Ntest = 500000
self.lr = 1e-1
self.nepoch = 20
self.nstep = 10
self.lb = -1
self.ub = 1
np.random.seed(self.seed)
torch.manual_seed(self.seed)
self.target = target
self.CF_model = NN(K, K2, K3, True)
self.GD_model = NN(K, K2, K3, True)
self.historyCF = np.zeros((self.numData.size, 4))
self.historyGD = np.zeros((self.numData.size, 4))
self.xTest = torch.randn(self.Ntest, self.n, self.K)
testScore = self.target.forward(self.xTest)
testProb = torch.nn.functional.softmax(testScore, dim=1)
self.yTest = torch.squeeze(torch.multinomial(testProb, 1))
def __init__(self):
QMainWindow.__init__(self)
loadUi('mainwindow.ui', self)
self.inputLetter.clicked.connect(self.showInputWidget)
# Сколько строк и столбцов в поле ввода
self.inputSize = 5
self.hiddenLayerSize = 12
self.outputSize = 5
self.iterations = 1000
self.lr = 0.3
self.data = Data()
self.data.generate_symbols(4, 1)
self.inputtedLetter = [0 for i in range(self.inputSize ** 2)]
self.nn = NN(self.inputSize ** 2,
self.outputSize,
self.hiddenLayerSize,
self.iterations,
self.data,
self.lr
)
def __init__(self):
self.env = gym.make("BreakoutNoFrameskip-v4")
self.env = wrap_deepmind(self.env, frame_stack=True, scale=True)
self.replay_size = 40
# setup baseline
# baseline will determine which replay pack the replay will be put into
self.baseline = RecentAvg(size=HydrAI.HEADS_N *
self.replay_size, init=0)
self.baseline_mid = 0
self.baseline_range = 0
self.replays = {
"good": ReplayPack(self.replay_size),
"normal": ReplayPack(self.replay_size),
"bad": ReplayPack(self.replay_size)
}
feature_size = self.env.observation_space.shape
action_size = self.env.action_space.n
self.nns = {
"good": NN(feature_size, action_size,
[partial(self.replays["good"].sample, 32)],
"good_"),
"normal": NN(feature_size, action_size,
[partial(self.replays["normal"].sample, 32)],
"normal_"),
"bad": NN(feature_size, action_size,
[partial(self.replays["bad"].sample, 32)],
"bad_")
}
self.a = list(range(action_size))
def GridSearch(epochs, trainloader, testloader, num_sample, input_dim,
OUTPUT_DIM, HIDDEN_DIMS, LRS, L2_LAMBD):
best_params = {}
best_acc = -1
for hidden_dim in HIDDEN_DIMS:
for LR in LRS:
for lambd in L2_LAMBD:
model = NN(num_sample,
input_dim,
hidden_dim,
OUTPUT_DIM,
init_method='He')
costs = model.train(trainloader, LR, lambd, epochs)
acc = Accuracy(model.predict(testloader['X']), testloader['Y'])
if acc > best_acc:
best_acc = acc
best_params['hidden_dim'] = hidden_dim
best_params['learning_rate'] = LR
best_params['L2_lambd'] = lambd
best_params['costs'] = costs
best_params['params'] = model.params
print(
'GridSearching: Hidden_dim: {:d}, Learning Rate: {:f}, L2 lambda: {:f} ---> Accuracy: {:f}.'
.format(hidden_dim, LR, lambd, acc))
return best_params
def __init__(self, game, numData):
self.n = game.n
self.K = game.K
self.seed = game.seed
self.numData = numData
self.Nstrat = self.K
self.Ntest = 500000
self.lr = 1e-1
self.nepoch = 20
self.nstep = 10
self.lb = -1
self.ub = 1
np.random.seed(self.seed)
torch.manual_seed(self.seed)
self.target = game.f
self.CF_model = NN(self.K, 10, 20, True)
self.GD_model = NN(self.K, 10, 20, True)
self.historyCF = np.zeros(4)
self.historyGD = np.zeros(4)
self.xTest = torch.randn(self.Ntest, self.n, self.K)
testScore = self.target.forward(self.xTest)
testProb = torch.nn.functional.softmax(testScore, dim=1)
self.yTest = torch.squeeze(torch.multinomial(testProb, 1))
def __init__(self, nn=None):
"""
Initialize blob by inheriting ParentSprite and assigning attributes
Args:
nn (class): can pass in the neural net from another blob
"""
super(Blob, self).__init__() #values are not needed
self.int_center = int(self.center_x), int(self.center_y)
self.radius = 10
self.angle = random.uniform(0, 2 * np.pi)
self.energy = MAX_ENERGY
self.alive = True
self.food_eaten = 0
self.score_int = 0
self.sight_angle = 10 * (np.pi / 180.)
self.sight_radius = 1000
self.target_blob = self
self.target_food = self
self.last_angle = .01
#scoring related
self.dist_moved = 0
self.color = int(self.energy / 4 + 5)
# Neural Network stuff here:
if nn is not None:
self.nn = NN(((1, nn), ))
else:
self.nn = NN()
def __init__(self, nn):
if type(nn) == type(OrderedDict()):
self._nn = NN(nn['player'])
else:
self._nn = nn
self._x = np.zeros(shape=(NX, ))
self._epsSame = 1e-2
self._rand = random.Random()
def __init__(self):
self.maxdepth = 4
self.moves = ["up", "right", "down", "left"]
self.nn = NN([16, 4])
self.weightFile = open("2048_nn_weights.pysave", "wb+")
if os.stat("2048_nn_weights.pysave").st_size > 0:
self.nn.loadWeights(self.weightFile)
signal.signal(signal.SIGINT, self.signal_handler)
def test_another_rbmtrain(self, n):
_dbn = DBN([784, 1000, 500, 250, 30], learning_rate=0.01, cd_k=1)
print(len(mnist.train.images))
for j in range(5):
for i in range(10):
_dbn.pretrain(mnist.train.images[i * 5500:i * 5500 + 5500],
128, 5)
_nnet = NN([784, 1000, 500, 250, 30, 250, 500, 1000, 784], 0.01, 128,
50)
_nnet.load_from_dbn_to_reconstructNN(_dbn)
_nnet.train(mnist.train.images, mnist.train.images)
_nnet.test_linear(mnist.test.images, mnist.test.images)
x_in = mnist.test.images[:30]
_predict = _nnet.predict(x_in)
_predict_img = np.concatenate(np.reshape(_predict, [-1, 28, 28]),
axis=1)
x_in = np.concatenate(np.reshape(x_in, [-1, 28, 28]), axis=1)
img = Image.fromarray((1.0 - np.concatenate(
(_predict_img, x_in), axis=0)) * 255.0)
img = img.convert('L')
img.save(str(n) + '_.jpg')
img2 = Image.fromarray((np.concatenate(
(_predict_img, x_in), axis=0)) * 255.0)
img2 = img2.convert('L')
img2.save(str(n) + '.jpg')
def trainEj1(inputLayers, lr, filenameInput, epocs, saveIn=None): X, Z, layers, activationFunctions = getTrainingParamsEj1(inputLayers, filenameInput, saveIn) nn = NN(layers, activationFunctions, lr) for i in range(epocs): e = nn.mini_batch(X,Z) print "Epoc %d error: %f" % (i, e) if (i % 50 == 0): Zhat = nn.predict(X[0:100,:]) calcAuc(Z[0:100], Zhat) if (saveIn): saveAs(saveIn, nn)
def main():
training_data, test_data, output_rsts = load_data()
#######################################
#Training
#######################################
input_layer_size = len(training_data[0][0])
net = NN((input_layer_size, 30, 2), output_rsts)
net.SGD(training_data, mini_batch_size=10, epochs=30, eta=3.0, test_data=test_data)
def createNN(typeOfNN, costf, inputsize, outputsize, hiddensize, hiddenlayers,
hiddenactivation):
neuralNet = NN(typeOfNN, costf)
neuralNet.createLayer(0, inputsize, "input")
for i in range(hiddenlayers):
neuralNet.createLayer(i + 1,
hiddensize,
activationMethod=hiddenactivation)
neuralNet.createLayer(hiddenlayers + 1, outputsize, "output", "Sigmoid")
for i in range(hiddenlayers + 1):
neuralNet.linkLayer(i + 1, i)
return neuralNet
def test_calc_output_grad():
config = {
"learning rate": .0001,
"debug": False,
"layer node count": [2, 2, 2],
"first moment decay rate": .9,
"second moment decay rate": .999,
"experience replay size": 8,
"replay batches": 4,
"model size": 50000,
"report frequency": 10,
"number episodes": 300000000,
"initial temp": 1,
"adam epsilon": 10**-8
}
num_inputs = config["layer node count"][0]
num_hidden = config["layer node count"][1]
num_output = config["layer node count"][2]
config["weights"] = [
np.ones((num_inputs, num_hidden)),
np.ones((num_hidden, num_output))
]
config["bias"] = [np.ones((num_hidden)), np.ones((num_output))]
states = []
action_indices = []
targets = []
finals = []
for i in range(2):
state = np.array([i, i])
action_index = i
target = i
states.append(state)
action_indices.append(action_index)
targets.append(target)
finals.append(i == 1)
nn = NN(config)
bg, wg = nn.calc_gradients(states, action_indices, states, np.ones(2),
finals, 1, 1)
test_weight_g = [
np.array([[3., 3.], [3., 3.]]),
np.array([[-.5, 9.], [-.5, 9.]])
]
test_bias_g = [np.array([[2.5, 2.5]]), np.array([[-.5, 3.]])]
for i in range(2):
if not np.allclose(wg[i], test_weight_g[i]):
raise ValueError("Error in calc weight grad")
if not np.allclose(bg[i], test_bias_g[i]):
raise ValueError("Error in calc weight grad")
def print_mean_faces():
""" Print the mean faces for 3, 5 and 7 per person training images """
for i, n_training in enumerate([3, 5, 7]):
train_img, train_labels, test_img, test_labels = load_images(
n_training)
nearest_neighbor = NN()
nearest_neighbor.train(train_img, train_labels, 10)
plt.subplot(1, 3, i + 1)
plt.imshow(shape_image(nearest_neighbor.mean_face), cmap='gray')
plt.title(f"{n_training} training images")
plt.axis('off')
plt.show()
def learn(self):
self.bound = self.getCFBound()
for datasizei in range(self.numData.size):
self.Ntrain = self.numData[datasizei]
self.batch_size = int(self.Ntrain / self.nepoch)
self.GD_model = NN(self.K, self.K2, self.K3, True)
self.learnGD(datasizei)
np.savetxt("historyGD"+str(self.n)+"_"+str(self.K)+"_"+str(self.seed)+".csv", self.historyGD, delimiter=',')
for datasizei in range(self.numData.size):
self.Ntrain = self.numData[datasizei]
self.CF_model = NN(self.K, self.K2, self.K3, True)
self.learnCF(datasizei)
np.savetxt("historyCF"+str(self.n)+"_"+str(self.K)+"_"+str(self.seed)+".csv", self.historyCF, delimiter=',')
def learn(self):
self.Ntrain = self.numData
self.batch_size = int(self.Ntrain / self.nepoch)
if self.Ntrain >= 100000:
self.batch_size = 5000
self.learn_model = NN(self.K, self.K2, self.K3, True)
self.learnGD()
np.savetxt("history" + str(self.n) + "_" + str(self.K) + "_" +
str(self.K2) + "_" + str(self.K3) + "_" + str(self.seed) +
".csv",
self.history,
delimiter=',')
return self.learn_model
def __init__(self, game, residual_layers=5):
"""
Args:
game: A Game object
residual_layers(int): number of residual layers. Default is 5
"""
self.game = game
input_shape = game.layers().shape
policy_shape = len(game.action_space)
self.nnet = NN(input_shape, residual_layers, policy_shape, True)
self.path_1 = 'model/checkpoint/old/'
self.path_2 = 'model/checkpoint/new/'
class NetTrainer():
"""
manages the two neural networks (older and newest)
"""
def __init__(self, game, residual_layers=5):
"""
Args:
game: A Game object
residual_layers(int): number of residual layers. Default is 5
"""
self.game = game
input_shape = game.layers().shape
policy_shape = len(game.action_space)
self.nnet = NN(input_shape, residual_layers, policy_shape, True)
self.path_1 = 'model/checkpoint/old/'
self.path_2 = 'model/checkpoint/new/'
def train(self, name):
"""
Args:
name(string): 'new' or 'old'
trains a specified neural network
"""
if name == 'old':
training_nn(self.game, self.nnet, self.path_1)
elif name == 'new':
training_nn(self.game, self.nnet, self.path_2)
else:
print("invalid name.")
def prepare(self, name):
"""
load a specified model which was previously saved
"""
if name == 'old':
self.nnet.pre_run(self.path_1)
elif name == 'new':
self.nnet.pre_run(self.path_2)
else:
print("invalid name.")
def pred(self, new_input):
"""
Args:
new_input: a layers representation
returns the predtion generated by the neural network
"""
return self.nnet.pred(new_input)
def compute_rms(source, target, nn=None):
'''
Make a single call to FLANN rms.
If a flannobject with prebuilt index is given, use that,
otherwise, do a full search.
'''
if nn:
results, dists = nn.match(target)
else:
nn = NN()
nn.add(source)
results, dists = nn.match(target)
return math.sqrt(sum(dists) / float(len(dists)))
def compute_rms(source, target, nn=None):
'''
Make a single call to FLANN rms.
If a flannobject with prebuilt index is given, use that,
otherwise, do a full search.
'''
if nn:
results, dists = nn.match(target)
else:
nn = NN()
nn.add(source)
results, dists = nn.match(target)
return math.sqrt(sum(dists) / float(len(dists)))
def main():
# Parameters
sizes = [784, 16, 16, 10]
eta = 3
mini_batch_size = 50
epochs = 30
nn = NN(sizes)
emnistTrainData, validation_data, test_data = mnist_loader.load_data_wrapper(
)
results = nn.stochastic_gradient_descent(training_data=emnistTrainData,
mini_batch_size=mini_batch_size,
epochs=epochs,
learning_rate=eta)
epochResults = [item[0] for item in results]
# Outputs image and what the trained network thinks it should be
count = 0
stop = 0 # int(input("How many images would you like to see?: "))
while count < stop:
example = emnistTrainData[count]
pixels = example[0].reshape((28, 28))
expectedLabel = np.argmax(example[1])
predictedLabel = np.argmax(nn.feed_forward(example[0]))
# Plot
plt.title(
'Expected: {expectedLabel}, Predicted: {predictedLabel}: '.format(
expectedLabel=expectedLabel, predictedLabel=predictedLabel))
plt.imshow(pixels, cmap='gray')
plt.show()
count += 1
# Plot learning progress
plt.plot(epochResults)
plt.ylabel("# Correct")
plt.xlabel("Epoch")
plt.title("Learning Rate = " + str(eta))
plt.show()
# test network on test data set
total = len(test_data)
correct = 0
for example in test_data:
inputLayer = example[0]
output = np.argmax((nn.feed_forward(inputLayer)))
if output == example[1]:
correct += 1
print("Model Correctly Identified %d out of %d examples" %
(correct, total))
def test_feed_forward():
config = {
"learning rate": .0001,
"debug": False,
"layer node count": [2, 2, 2],
"first moment decay rate": .9,
"second moment decay rate": .999,
"experience replay size": 8,
"replay batches": 4,
"model size": 50000,
"report frequency": 10,
"number episodes": 300000000,
"initial temp": 1,
"adam epsilon": 10**-8
}
num_inputs = config["layer node count"][0]
num_hidden = config["layer node count"][1]
num_output = config["layer node count"][2]
config["weights"] = [
np.ones((num_inputs, num_hidden)),
np.ones((num_hidden, num_output)) * 2
]
config["bias"] = [np.ones((num_hidden)), np.ones((num_output)) * 2]
nn = NN(config)
state = np.ones(num_inputs) * 1
state2 = np.ones(num_inputs) * 2
state3 = np.ones(num_inputs) * 3
states = np.row_stack((state, state2, state3))
zs, activations = nn.feed_forward(states)
for i in range(3):
if not np.allclose(activations[-2][i], num_inputs * (i + 1) + 1):
raise ValueError("hidden outputs are off")
for j in range(3):
if not np.allclose(activations[-1][j],
((num_inputs * (j + 1) + 1) * num_hidden * 2) + 2):
raise ValueError("hidden outputs are off")
# Test RELU
state = np.ones(num_inputs) * -2
states = state.reshape((1, 2))
zs, activations = nn.feed_forward(states)
if not np.allclose(activations[-2][:], 0):
raise ValueError("hidden outputs are off")
if not np.allclose(activations[-1][:], 2): # only bias..
raise ValueError("hidden outputs are off")
def __init__(self, health, speed, coords, dna):
Creature.__init__(self, health, speed, coords)
self.actions = []
self.lifespan = 0
self.score = 0
self.action_nn = NN(2, 2, 2)
self.move_nn = NN(2, 1, 2)
if (dna is None):
self.move_nn.set_random_NN_weights()
self.dna = self.move_nn.get_weights()
else:
print(dna, end="\n")
print(dna)
self.move_nn.set_NN_weights()
self.dna = dna
def __init__(self, doc2vec):
super(NNClassifier, self).__init__(doc2vec)
self.nn_des = {
'layer_description': [
{
'name': 'input',
'unit_size': 100,
},
{
'name': 'hidden1',
'active_fun': tf.nn.relu,
'unit_size': 400,
},
{
'name': 'output',
'active_fun': None,
'unit_size': 59,
},
],
}
self.max_pass = 5000
self.batch_size = 10000
self.step_to_report_loss = 5
self.step_to_eval = 10
self.nn_model = NN(self.nn_des)
self.learning_rate = 0.01
def __init__(self, seed, n, K):
self.n = n
self.K = K
self.Kd = int(K * 2 / 3)
self.Kc = int(K * 1 / 3)
self.seed = seed
np.random.seed(seed)
self.eps = 1e-8
self.CfeatureWeights = np.random.rand(self.Kc) - 0.5
self.DfeatureWeights = np.random.rand(self.Kd) - 0.5
for k in range(self.Kc):
if self.CfeatureWeights[k] == 0:
self.CfeatureWeights[k] = self.eps
for k in range(self.Kd):
if self.DfeatureWeights[k] == 0:
self.DfeatureWeights[k] = self.eps
self.nodes = [
Node(K, self.CfeatureWeights, self.DfeatureWeights, seed)
for i in range(n)
]
self.us = np.array([node.u for node in self.nodes])
maxCost = 0
for i in range(n):
maxCost += self.nodes[i].getMaxCost()
self.budget = np.random.rand() * maxCost * 0.2
self.f = NN(K, 10, 20, False)
self.allWeights = np.concatenate(
[self.CfeatureWeights, self.DfeatureWeights])
self.f.input_linear.weight = torch.nn.Parameter(
torch.unsqueeze(torch.tensor(self.allWeights, dtype=torch.float),
dim=0))
def helper_test_coupling(my_activation, tf_activation, loss, inputs, y_true,
units):
tf.random.set_seed(42)
tf_layer = Dense(units, activation=tf_activation)
tf_layer.build(inputs.shape)
with tf.GradientTape(persistent=True) as tape:
tape.watch([inputs, *tf_layer.trainable_weights])
pred_tf = tf_layer(inputs)
loss = loss(y_true, pred_tf)
*grads_tf, dY = tape.gradient(
loss, [inputs, *tf_layer.trainable_weights, pred_tf])
tf.random.set_seed(42)
my_layer = NN.Layer(units, my_activation)
my_layer.build(inputs.shape)
pred_my = my_layer(inputs)
dX, [dW, dB] = my_layer.backprop(dY)
grads_my = [dX, dW, dB]
assert np.allclose(pred_my, pred_tf)
assert all(
np.allclose(grad_my, grad_tf)
for grad_my, grad_tf in zip(grads_my, grads_tf))
def eat_food(self, model):
"""
tests whether or not a blob eats food on a given frame. If a blob
eats food, remove the food, increase the blob's energy, asexually
reproduce based on its neural net dna, and do some population control.
Args:
model (object): contains attributes of the environment
"""
for i in range(len(model.foods) - 1, -1, -1):
f = model.foods[i]
if self.intersect(f):
self.food_eaten += 1
self.energy += 500
if self.energy > MAX_ENERGY:
self.energy = MAX_ENERGY
del model.foods[i]
model.foods.append(Food())
model.blobs.append(Blob(NN([(1, self.nn)])))
if len(model.blobs) > BLOB_NUM:
energy_list = []
for blob in model.blobs:
energy_list.append(blob.energy)
del model.blobs[np.argmin(energy_list)]
class NNPlayer:
def __init__(self, nn):
if type(nn) == type(OrderedDict()):
self._nn = NN(nn['player'])
else:
self._nn = nn
self._x = np.zeros(shape=(NX, ))
self._epsSame = 1e-2
self._rand = random.Random()
def setName(self, n):
self._name = n
def setSeed(self, seed):
self._rand.seed(seed)
def name(self):
return self._name
def sDict(self):
return {'player': self._nn.sDict()}
def _encodeBoard(self, ttt):
marker = ttt.whoseTurn()
for i, b in enumerate(ttt.board()):
if b == game.Empty:
self._x[i] = 0
self._x[i + 9] = 0
elif b == marker:
self._x[i] = 1
self._x[i + 9] = 0
else:
self._x[i] = 0
self._x[i + 9] = 1
def move(self, ttt):
return self.moveAndValue(ttt)[0]
def moveAndValue(self, ttt):
self._encodeBoard(ttt)
bestQ = -1e99
qs = []
vm = ttt.validMoves()
for m in vm:
ttt.add(m)
self._encodeBoard(ttt)
q = self._nn(self._x)[0]
ttt.undo()
self._encodeBoard(ttt)
qs.append(q)
if q > bestQ:
bestQ = q
bestMoves = []
for iMove, q in enumerate(qs):
if abs(q - bestQ) < self._epsSame:
bestMoves.append(vm[iMove])
return (self._rand.choice(bestMoves), bestQ, qs)
def main(config):
net = NN(config)
model = config.get("Input", "loadmodel")
if model:
net.loadmodel(model)
else:
dataTrain = Data(config.get("Input","train"), config.get("Input","format"), net.verbosity)
try:
trpr = net.train( dataTrain )
except KeyboardInterrupt:
sys.stderr.write("Aborting the training procedure...\n")
pass
ctest = config.get("Input","test")
if ctest:
dataTest = Data(ctest, config.get("Input","format"), net.verbosity)
conf, err, tepr = net.test( dataTest )
output = net.metrics.obtain( dataTest, tepr, conf, err )
print
print "Test statistics:"
print conf
print "\n".join(map(string.strip,filter(len,output.values())))
ftr = config.get("Output", "probstrain")
fte = config.get("Output", "probstest")
if ftr: Data.writeProbs(trpr, ftr)
if fte: Data.writeProbs(tepr, fte)
model = config.get("Output", "savemodel")
if model:
net.savemodel(model)
from nn import NN
nn = NN()
train = [[[0, 0], [0]], [[0, 1], [1]], [[1, 0], [1]], [[1, 1], [0]]]
for x in train:
print(x)
nn.backPropagation(train, 0.5, 2, 3, 1)
print(nn.evaluate([0, 0]))
print(nn.evaluate([0, 1]))
print(nn.evaluate([1, 0]))
print(nn.evaluate([1, 1]))
model8.prune(trainM2, ncMonks) print "18. -----------prune----------" model8.test(testM2, ncMonks, 1) print "--------------------------------" print "19. DT, Monks3, IGR--------------------------------" model9 = DT() model9.discreteTrain(trainM3, ncMonks, 0) model9.test(testM3, ncMonks, 1) # Prune model9.prune(trainM3, ncMonks) print "20. -----------prune----------" model9.test(testM3, ncMonks, 1) print "--------------------------------" # Neural Network print "21. NN, Iris, alternate weight, momentum--------------------------------" model21 = NN(arch=[5, 6, ncIris]) model21.initializeWeight(trainSetIris) model21.train(trainSetIris, ncIris) model21.test(testSetIris, ncIris) print "--------------------------------" print "22. NN, Iris, not alternate weight, momentum--------------------------------" model22 = NN(arch=[5, 6, ncIris]) model22.train(trainSetIris, ncIris) model22.test(testSetIris, ncIris) print "--------------------------------" print "23. NN, Iris, not alternate weight, no momentum--------------------------------" model23 = NN(arch=[5, 6, ncIris]) model23.turnOffMomentum() model23.train(trainSetIris, ncIris) model23.test(testSetIris, ncIris) print "24. NN, Iris, alternate weight, no momentum--------------------------------"
from nn import NN
import scipy.io as sio
if __name__ == "__main__":
# Create Training data
train_data = sio.loadmat("ex4data1.mat")
first_network = NN([400, 25, 10])
input_size = len(train_data["X"])
train_parameters = {
"train_data": train_data,
"step_size": 0.2,
"input_size": input_size,
"lambda": 1.7,
"num_of_iterations": 400,
}
# print first_network.predict(test_data=train_data)
first_network.train(**train_parameters)
print first_network.predict(test_data=train_data)
import sys
from nn import NN
import numpy
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
def sumaVector(a,b):
return [x+y for x,y in zip(a,b)]
nn = NN()
trainingSet = []
testSet = []
if len(sys.argv) == 3:
nn.loadWeights(sys.argv[1])
testFile = open(sys.argv[2])
#TEST SET
for line in testFile:
string = line.split(" ", 3)
x = [[float(string[0])/20.0,float(string[1])/20.0]]
if int(string[2]) == 1 :
x += [[1]]
else:
x += [[0]]
testSet += [x]
def icp(source, target, D=3, verbosity=0, epsilon=0.000001):
'''
Perform ICP for two arrays containing points. Note that these
arrays must be row-major!
NOTE:
This function returns the rotation matrix, translation for a
transition FROM target TO source. This approach was chosen because
of computational efficiency: it is now possible to index the source
points beforehand, and query the index for matches from the target.
In other words: Each new point gets matched to an old point. This is
quite intuitive, as the set of source points may be (much) larger.
'''
nn = NN()
# init R as identity, t as zero
R = np.eye(D, dtype='float64')
t = np.zeros((1, D), dtype='float64')
T = homogenize_transformation(R, t)
transformed_target = target
# Build index beforehand for faster querying
nn.add(source)
# Initialize rms to bs values
rms = 2
rms_new = 1
while True:
# Update root mean squared error
rms = rms_new
# Rotate and translate the target using homogeneous coordinates
# unused: transformed_target = np.dot(T, target_h).T[:, :D]
transformed_target = np.dot(R, transformed_target.T).T + t
centroid_transformed_target = np.mean(transformed_target, axis=0)
# Use flann to find nearest neighbours. Note that because of index it
# means 'for each transformed_target find the corresponding source'
results, dists = nn.match(transformed_target)
# Compute new RMS
rms_new = math.sqrt(sum(dists) / float(len(dists)))
# Give feedback if necessary
if verbosity > 0:
sys.stdout.write("\rRMS: {}".format(rms_new))
sys.stdout.flush()
# We find this case some times, but are not sure if it should be
# possible. Is it possible for the RMS of a (sub)set of points to
# increase?
# assert rms > rms_new, "RMS was not minimized?"
# Check threshold
if rms - rms_new < epsilon:
break
# Use array slicing to get the correct targets
selected_source = nn.get(results)
centroid_selected_source = np.mean(selected_source, axis=0)
# Compute covariance, perform SVD using Kabsch algorithm
correlation = np.dot(
(transformed_target - centroid_transformed_target).T,
(selected_source - centroid_selected_source))
u, s, v = np.linalg.svd(correlation)
# u . S . v = correlation =
# V . S . W.T
# Ensure righthandedness coordinate system and calculate R
d = np.linalg.det(np.dot(v, u.T))
sign_matrix = np.eye(D)
sign_matrix[D-1, D-1] = d
R = np.dot(np.dot(v.T, sign_matrix), u.T)
t[0, :] = np.dot(R, -centroid_transformed_target) + \
centroid_selected_source
# Combine transformations so far with new found R and t
# Note: Latest transformation should be on inside (r) of the equation
T = np.dot(T, homogenize_transformation(R, t))
if verbosity > 2:
try:
if raw_input("Enter 'q' to quit, or anything else to" +
"continue") == "q":
sys.exit(0)
except EOFError:
print("")
sys.exit(0)
except KeyboardInterrupt:
print("")
sys.exit(0)
# Unpack the built transformation matrix
R, t = dehomogenize_transformation(T)
return R, t, T, rms_new, nn
def run():
np.random.seed(142)
# build a dataset from the word2vec features
logging.info('Loading the word2vec model...')
w2v = load_word2vec()
vec_function = lambda sentence: get_word2vec_features(w2v, sentence)
num_features = w2v.layer1_size
logging.info('Building the word2vec sentence features...')
w2v_X_train, w2v_Y_train, w2v_X_test , w2v_Y_test = load_data(vec_function, num_features)
# del w2v # don't need it anymore
# now train a neural net on this dataset
logging.info('Training a neural net on the word2vec features...')
w2v_nn = NN(400, 1000, 300)
w2v_nn.train(w2v_X_train, w2v_Y_train)
# threshold the results and show some evaluations to see if we can improve on this
w2v_train_predictions = w2v_nn.predict_classes(w2v_X_train)
w2v_test_predictions = w2v_nn.predict_classes(w2v_X_test)
print_evaluations(w2v_Y_test, w2v_test_predictions)
# Now let's get the linguistic features
logging.info('Building the linguistic features...')
vec_function = lambda sentence: get_linguistic_features(sentence)
num_features = NUM_LINGUISTIC_FEATURES
ling_X_train, ling_Y_train, ling_X_test , ling_Y_test = load_data(vec_function, num_features)
# now let's combine the output of the neural net with the linguistic features
# first binarize the neural net predictions so that we have one indicator feature per class
# convert the outputs to 3 indicator (i.e. binary) features
mlb = MultiLabelBinarizer()
w2v_train_predictions_binarized = mlb.fit_transform(w2v_train_predictions.reshape(-1, 1))
w2v_test_predictions_binarized = mlb.fit_transform(w2v_test_predictions.reshape(-1, 1))
# now stack these with the ling features
# now combine the features and train a new classifier
X_train = np.hstack((
w2v_train_predictions_binarized,
ling_X_train
))
X_test = np.hstack((
w2v_test_predictions_binarized,
ling_X_test
))
logging.info('Normalising the final dataset to unit length')
lengths = np.linalg.norm(X_train, axis=1)
X_train = X_train / lengths[:, None] # divides each row by the corresponding element
lengths = np.linalg.norm(X_test, axis=1)
X_test = X_test / lengths[:, None]
logging.info('Training a neural net on the final dataset...')
nn = NN(X_train.shape[1], 3000, 600)
nn.train(X_train, w2v_Y_train)
predictions = nn.predict_classes(X_test)
print_evaluations(w2v_Y_test, predictions)
predictions = nn.predict_continuous(X_test)
print_evaluations(w2v_Y_test, predictions, classification=False)
# logging.info('Training a logistic regression model on the final dataset...')
# lr = LogisticRegression(C=1e5, class_weight='auto', random_state=33)
# lr.fit(X_train, w2v_Y_train)
#
# predictions = lr.predict(X_test)
# print_evaluations(w2v_Y_test, predictions)
logging.info('Done.')
import sys
from nn import NN
nn = NN()
if (len(sys.argv) < 5):
print("Usage:\n python Iris-binario.py training_file learning_rate number_hidden test_file")
quit()
#ARGUMENTS
trainingFile = open(sys.argv[1])
n = float(sys.argv[2])
nhidden = int(sys.argv[3])
testFile = open(sys.argv[4])
#TRAINING SET
trainingSet = []
testSet = []
for line in trainingFile:
string = line.split(",", 5)
x = [[float(string[0])/10.0,float(string[1])/10.0,float(string[2])/10.0,float(string[3])/10.0]]
if string[4].rstrip() == "Iris-setosa":
x += [[1]]
else:
x += [[0]]
trainingSet += [x]
#TEST SET
for line in testFile:
string = line.split(",", 5)
x = [[float(string[0])/10.0,float(string[1])/10.0,float(string[2])/10.0,float(string[3])/10.0]]