def diff( file1path, file2path ):
''' find the diff of the benchmark for two dates and create a report'''
seqlist1 = os.listdir(file1path)
seqlist2 = os.listdir(file2path)
diff_log = 'Diff between path:\n\t%s\n\t%s\n\n' % (file1path,file2path)
# Find out the difference in seqence files
seq_common = set(seqlist1) & set(seqlist2)
diff_in_seqs_file = ''
for i in set(seqlist1)-seq_common:
diff_in_seqs_file = diff_in_seqs_file + '\t+' + i + '\n'
for i in set(seqlist2)-seq_common:
diff_in_seqs_file = diff_in_seqs_file + '\t-' + i + '\n'
if diff_in_seqs_file == '': diff_in_seqs_file = '\tnone\n '
diff_log = diff_log + 'Difference in seqs files:\n' + diff_in_seqs_file + '\n'
# Find the diff in the common seqfiles
for seq in seq_common:
if seq.endswith('.txt'):
print "Diffing file: %s\n" %seq
file1 = parse_seq.parse_seq( file1path + seq)
file2 = parse_seq.parse_seq( file2path + seq)
diff_counter, diff_message, diff_data = file1.diff(file2)
if diff_counter:
diff_log = diff_log + 'Mismatch in file: ' + seq +'\n\n' + diff_message +'\n\n'
print diff_message
f = open(file1path + 'diff.log', 'w')
f.write(diff_log)
f.close
def diff_file(filepath1,filepath2):
print "Diffing file:\n\n\t%s\n\t%s \n" %(filepath1,filepath2)
file1 = parse_seq.parse_seq( filepath1 )
file2 = parse_seq.parse_seq( filepath2 )
diff_counter, diff_message, diff_data = file1.diff(file2)
print "Result:"
print diff_message
return diff_message
def plot_file(seq_file, digital=['odtttl','probe'], analog=['odtpow','bfield'],autorange=1,plot_range_min=0,plot_range_max=10000):
seq = parse_seq(seq_file)
data_digi_names = []
data_digi_time = []
data_digi = []
for chan,data in zip(seq.digi_channels,seq.digi_data):
if chan in digital:
data_digi_names.append(chan)
data_digi_time.append(seq.digi_time)
data_digi.append(data)
data_analog_names = []
data_analog_time = []
data_analog = []
for channels,data,time in zip(seq.analog_channels,seq.analog_data,seq.analog_time):
for chan,da in zip(channels,data):
if chan in analog:
data_analog_names.append(chan)
data_analog_time.append(time)
data_analog.append(da)
fig = plt.figure()
plot_seq(fig,data_digi_names,data_digi_time,data_digi,data_analog_names,data_analog_time,data_analog,autorange,plot_range_min,plot_range_max)
fig.set_size_inches(16.0,10.0)
fig.savefig(seq_file.split('.')[0]+'.png')
def _reload_fired(self):
seq = parse_seq(self.file)
self.waveforms[0].data = seq.digi_data
self.waveforms[0].time = seq.digi_time
for i, analog in enumerate(seq.analog_channels):
self.waveforms[i + 1].data = seq.analog_data[i]
self.waveforms[i + 1].time = seq.analog_time[i]
def _reload_fired(self):
seq = parse_seq(self.file)
self.waveforms[0].data = seq.digi_data
self.waveforms[0].time = seq.digi_time
for i, analog in enumerate(seq.analog_channels):
self.waveforms[i+1].data = seq.analog_data[i]
self.waveforms[i+1].time = seq.analog_time[i]
def _load_fired(self):
seq = parse_seq(self.file)
self.waveforms= []
self.waveforms.append( waveform( name= 'Digital', channels = seq.digi_channels, time = seq.digi_time, data = seq.digi_data))
for i, analog in enumerate(seq.analog_channels):
self.waveforms.append( waveform( name= 'Analog%d' %i, channels = analog, time = seq.analog_time[i], data = seq.analog_data[i] ))
def _load_fired(self):
seq = parse_seq(self.file)
self.waveforms = []
self.waveforms.append(
waveform(name='Digital',
channels=seq.digi_channels,
time=seq.digi_time,
data=seq.digi_data))
for i, analog in enumerate(seq.analog_channels):
self.waveforms.append(
waveform(name='Analog%d' % i,
channels=analog,
time=seq.analog_time[i],
data=seq.analog_data[i]))
def plot_file(seq_file,
digital=['odtttl', 'probe'],
analog=['odtpow', 'bfield'],
autorange=1,
plot_range_min=0,
plot_range_max=10000):
seq = parse_seq(seq_file)
data_digi_names = []
data_digi_time = []
data_digi = []
for chan, data in zip(seq.digi_channels, seq.digi_data):
if chan in digital:
data_digi_names.append(chan)
data_digi_time.append(seq.digi_time)
data_digi.append(data)
data_analog_names = []
data_analog_time = []
data_analog = []
for channels, data, time in zip(seq.analog_channels, seq.analog_data,
seq.analog_time):
for chan, da in zip(channels, data):
if chan in analog:
data_analog_names.append(chan)
data_analog_time.append(time)
data_analog.append(da)
fig = plt.figure()
plot_seq(fig, data_digi_names, data_digi_time, data_digi,
data_analog_names, data_analog_time, data_analog, autorange,
plot_range_min, plot_range_max)
fig.set_size_inches(16.0, 10.0)
fig.savefig(seq_file.split('.')[0] + '.png')
