コード例 #1
0
ファイル: pet_wrapper.py プロジェクト: cindeem/ardatools
        if not has_ecats:
            print recondir, 'no ecats'
            logging.error('NO ECATS: %s'%recondir)
            continue
        ## generate string of arda output directory

        arda_dir = ptr.make_outdirname(ecats, tracer=real_tracer.upper(),
                                       arda=arda)
        if os.path.isdir(arda_dir):
            try:
                ardascans.remove(arda_dir)
            except:
                ardascans.append(recondir)
        exists, orig_ecats = ptr.glob_file('%s/*.v'%arda_dir, single=False)

        same = ptr.check_dates(ecats, orig_ecats)
        has_recon, reconnotes_rsync = ptr.get_reconnotes_fromsync(recondir,
                                                                  real_tracer)
        recon_fname = ptr.gen_recon_fname(ecats, arda_dir, real_tracer)
        orig_exists, orig_notes = ptr.glob_file('%s/*notes*.txt'%(arda_dir))
        copy = ptr.check_recon_notes(recon_fname, orig_notes)
        print 'same',same, 'copy reconnotes', copy, arda_dir
        logging.info(arda_dir)
        logging.info('Same Files (%s): %s'%(same, arda_dir))
        logging.info('%s Copy ReconNotes: %s (exists: %s)'%(subid, copy,
                                                            has_recon))
        if not same:  #copy ecats to new dir
            logging.info('NEW COPY: %s, %s'%(subid,
                                             os.path.split(arda_dir)[-1]))
            ptr.update_outdir(arda_dir, clobber=True)
            ptr.copy_files_withdate(ecats, arda_dir)
コード例 #2
0
ファイル: biograph_wrapper.py プロジェクト: cindeem/ardatools
            continue
        scandate = bio.check_scandates(tgzs)
        # generate full output directory name
        real_tracer = bio.get_real_tracer(recon)
        dirnme = bio.make_dirname(scandate, real_tracer)
        outdir, exists = utils.make_rec_dir(os.path.join(arda, subid),
                                            dirname = dirnme)
        if not exists:
            # directory didnt exist, copy files
            logging.info('%s is NEW, copy date'%outdir)
            copy = True
        else:
            biographs.remove(outdir)

            arda_tgz, arda_ntgz=bio.tgz_in_recon(outdir, subid)
            same_file = ptr.check_dates(tgzs, arda_tgz)
            if same_file:
                logging.info('%s exists, files are the same'%(outdir))
                copy = False
            else:
                copy = True
                logging.info('%s exists, files NOT same'%(outdir))

        if copy:
            os.system('rm %s/*'%(outdir))
            ptr.copy_files_withdate(tgzs, outdir)
            logging.info('COPIED TGZ: '%(tgzs))
        # check for recon notes in sync
        recon_notes = bio.check_reconnotes(recon)
        if recon_notes is None:
            # nothing to copy