if not has_ecats:
print recondir, 'no ecats'
logging.error('NO ECATS: %s'%recondir)
continue
## generate string of arda output directory
arda_dir = ptr.make_outdirname(ecats, tracer=real_tracer.upper(),
arda=arda)
if os.path.isdir(arda_dir):
try:
ardascans.remove(arda_dir)
except:
ardascans.append(recondir)
exists, orig_ecats = ptr.glob_file('%s/*.v'%arda_dir, single=False)
same = ptr.check_dates(ecats, orig_ecats)
has_recon, reconnotes_rsync = ptr.get_reconnotes_fromsync(recondir,
real_tracer)
recon_fname = ptr.gen_recon_fname(ecats, arda_dir, real_tracer)
orig_exists, orig_notes = ptr.glob_file('%s/*notes*.txt'%(arda_dir))
copy = ptr.check_recon_notes(recon_fname, orig_notes)
print 'same',same, 'copy reconnotes', copy, arda_dir
logging.info(arda_dir)
logging.info('Same Files (%s): %s'%(same, arda_dir))
logging.info('%s Copy ReconNotes: %s (exists: %s)'%(subid, copy,
has_recon))
if not same: #copy ecats to new dir
logging.info('NEW COPY: %s, %s'%(subid,
os.path.split(arda_dir)[-1]))
ptr.update_outdir(arda_dir, clobber=True)
ptr.copy_files_withdate(ecats, arda_dir)
continue
scandate = bio.check_scandates(tgzs)
# generate full output directory name
real_tracer = bio.get_real_tracer(recon)
dirnme = bio.make_dirname(scandate, real_tracer)
outdir, exists = utils.make_rec_dir(os.path.join(arda, subid),
dirname = dirnme)
if not exists:
# directory didnt exist, copy files
logging.info('%s is NEW, copy date'%outdir)
copy = True
else:
biographs.remove(outdir)
arda_tgz, arda_ntgz=bio.tgz_in_recon(outdir, subid)
same_file = ptr.check_dates(tgzs, arda_tgz)
if same_file:
logging.info('%s exists, files are the same'%(outdir))
copy = False
else:
copy = True
logging.info('%s exists, files NOT same'%(outdir))
if copy:
os.system('rm %s/*'%(outdir))
ptr.copy_files_withdate(tgzs, outdir)
logging.info('COPIED TGZ: '%(tgzs))
# check for recon notes in sync
recon_notes = bio.check_reconnotes(recon)
if recon_notes is None:
# nothing to copy
